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UnicodeDecodeError: 'utf-8' codec can't decode byte 0x90 in position 48:cluster.dict.py

Open khl0798 opened this issue 3 months ago • 4 comments

I have faced the problems hg38+hg38_1000G_test_20bp-NGG-SpCas9.txt_guides.txt_gencode_encode.hg38.bed_6_2_2_chrX_KI270881v1_alt.total.cluster.txt.tmp_sort.txt file have specific symbols <90> <E0> in third columns. And I had faced with error blows,I want to know if this problem can be solved,any ideas about how to solve this problem would be very grateful. image

run command line

crisprme.py complete-search --genome Genomes/hg38 --vcf list_vcf.txt/ --guide sg1617.txt --pam PAMs/20bp-NGG-SpCas9.txt --annotation Annotations/gencode_encode.hg38.bed --samplesID list_samplesID.txt --gene_annotation Gencode/gencode.protein_coding.bed --bMax 2 --mm 6 --bDNA 2 --bRNA 2 --merge 3 --output sg1617.6.2.2_new --thread 58

8. Annotation

I download the docker crispr using command line: docker pull pinellolab/crisprme file format the third column have specific symbols,<90><E0> image Any help tracing this down would be helpful, I am looking forward to running the tool on a real sequence!

Let me know if any other information would be helpful... khl

khl0798 avatar Mar 22 '24 09:03 khl0798