space in file path issue update?

[Walsh-Quigley]

Hi @bilalSarwar2020,

I believe the problem is because the path to your fastqs has a space in it (the "pooled samples" folder).

I just pushed a fix for this problem to github, but you should be able to fix the problem for your current version by changing the folders with spaces in them (e.g. "pooled samples" folder to "pooled_samples") and rerunning it.

Let me know if that works.

Originally posted by @kclem in #8

hello, I know this issue was from 6 years ago, I wanted to ask if any changes have been made since then to alleviate the error when there is a space in the file path with fastp. I think I'm still running into the issue and wanted to know if I was missing something. ultimately my question is:

Will the analysis still break if there is a space in the file path?

thanks!

[Colelyman]

Hi @Walsh-Quigley,

Thanks for using CRISPResso and for your question! You should be able to have spaces in the names of your regions in CRISPRessoPooled now. Please let us know if you run into any issues and we would be happy to look into them.

If you supply files with spaces via the CLI or Batch files, make sure that you add quotes around them.

Thanks, Cole