Pi-Chuan Chang

Hi @Phillip-a-richmond , I want to give an update on this issue: As part of working on v1.4.0, we did some experiments on this, which is still work in progress....

Hi @Phillip-a-richmond and everyone else who might be following this thread, One update: one post-processing trick that you can do now is: take the probability distribution, and ignore the 0/1...

Follow up from my previous comment, @doron-st has shared his script here: https://github.com/Ultimagen/VariantCalling/blob/c2634d8c08db4473e61b786eed06afc2bb8fccd1/ugvc/pipelines/convert_haploid_regions.py (Thanks Doron!)

Thanks @anands-repo for the PR. FYI: In the short term, we likely won't have bandwidth to confirm that this works. I'll leave this open and open an internal issue to...

Hi @dkurt , sorry it took me a while to get to this. Update: I've run internally once with your updated code. So far I've only run on one WES...

Got it. My first test run did finish successfully and the hap.py numbers are the same as before. I'm now running a few bigger runs to take a look at...

Hi @nurmians , The link the @pgrosu link to seems like the right one from Ultima! Our team is working on incorporating this as part of postprocess_variants. The official version...

Hi @Ge-Lab , this has been inactive for more than a month, so I'll close. But please feel free to reopen with more details now if you want to follow...

Thanks @AndrewCarroll for the follow-up answer. I will now close this issue.

Hi @Carl-labhub , one thing to confirm: In the original post, you said: Installation method (Docker, built from source, etc.): Docker But from the information you provided, it seems like...