Mario Picciani
Mario Picciani
Changed the default pkg_constant for batchglm autograd to False since it runs double the time compared to analytic differentiation. Added a unit test to compare numpy with tf2 DE results...
**Is your feature request related to a problem? Please describe.** Right now, there is no immediate solution for adding cookietemple to an existing repo. This would be a great feature...
- [x] Additional function parameters / changed functionality / changed defaults? - [ ] New analysis tool: A simple analysis tool you have been using and are missing in `sc.tools`?...
**Question** Maybe a stupid question of a not so experienced developer: I do not quite get how to properly use the release drafter in combination with cookietemple bump-version. It adds...
**Question** In this commit: https://github.com/cookiejar/cookietemple/commit/faaff93fc0610e0e74a6f9ade98ceb9a9d383cdc darglint was removed from the pre-commit session. What is the reason behind this? How would I need to change this - if I overwrite my...
When using `sc.pl.scatter()` and providing an existing axis object, the legend doesn't always appear correctly and cannot be accessed. This doesn't seem to happen with a categorial coloring however, only...
This branch contains the dispersion-smoothing functionality: - [x] write wrapper around the training procedure in the training_procedure function. - [x] check for missing optional import of scikit-fda - [x] implement...
Adds tensorflow 2 specific code at `batchglm/train/tf2/`. Includes negative binomial noise model. No changes in other folders were made. To import, we will need to apply changes to `api/models/glm_nb.py`, so...
`batchglm/models/base_glm/simulator/Simulator` has a property `self.sample_description` along with other properties that are not that visible since they are assigned within methods and are not explained via docstrings. We should there provide...
Check if estimator.get_model_container is needed for diffxpy. Do we change this in diffxpy or batchglm?