phys2bids
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physiopy
Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!
## Proposed Changes ## Change Type - [ ] `minor` (+0.1.0) ## Checklist before review - [ ] \[Code or tests only\] I wrote/updated the necessary docstrings. [ ] Please,...
added functions to split physio signals into runs using peakdet GUI peakdet is yet to be imported in slice4phys Closes # ## Proposed Changes - - - ## Change Type...
I was reading the README file and noticed a typo, so I corrected it. Then also made a few minor formatting improvements. I did them each as separate commits if...
So far we're adopting basic logging - 95% of the time that's ok, but for instance the logs are not catching errors, which is annoying for bugfixes. [Loguru](https://github.com/Delgan/loguru) might offer...
The ability to read hdf5 would permit a better alternative to txt files, which is the easiest way of running phys2bids when you need to operate over the channels. ##...
For instance, units of measures of the channel and other little details. ## Detailed Description ## Context / Motivation ## Possible Implementation
## Detailed Description ## Context / Motivation ## Possible Implementation
Rather than dropping channels that were not selected by the user _after_ the objects have been initiated, it would be better to read only the selected channels from the files,...
Given that now there is automated code to find the trigger channel in the data, it would be great to implement these features to find and return the number of...
## Expected Behavior ## Actual Behavior ``` /home/oesteban/.miniconda/lib/python3.9/site-packages/phys2bids/physio_obj.py:649: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated....