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ONT preset values are commented out in code. Why?

Open TimD1 opened this issue 2 years ago • 0 comments

Hi, I noticed that the preset for ONT (-x ont) is commented out in the code: https://github.com/philres/ngmlr/blob/8d7677929001d1d13c6b4593c409a52044180dca/src/ArgParser.cpp#L258-L266 This makes the behavior for -x ont identical to -x pacbio, the default behavior. Are those the intended parameters that should be used for ONT reads? Have the ONT values not undergone sufficient testing yet?

TimD1 avatar Apr 05 '22 19:04 TimD1