PopCOGenT run error

[Diamonds95]

I had run PopCOGenT.sh successfully before, but when I use another dataset it failed, the error message is : Traceback (most recent call last): File "cluster.py", line 315, in main() File "cluster.py", line 70, in main linear_model=negative_selection_linear_fit()) File "cluster.py", line 298, in make_edgefile n2 = ','.join(clonal_components[n2]) TypeError: sequence item 0: expected str instance, numpy.int64 found Is there any special requirements for input fasta_file name?

[philarevalo]

Yes, I think this is an issue with the genome names being interpreted as integers and not strings. Do your genome filenames only have numbers (aside from the .fasta extension)?

I should be able to have a fix out for this, but unfortunately I probably won't be able to get to it for at least a week.

[Diamonds95]

Thanks for your reply! Yes , all my fasta file were named by only numbers. Maybe I can rename them and try again!