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Published 20 hours ago • verified publisher icon phflot

ome.tiff saving + swap dimension

Open sdaste opened this issue 1 year ago • 1 comments

Hi,

First thank you for this great package!

Flow_registration outputs multi-channel TIFF stack with dimensions frame x (spatial_1) x (spatial_2) x channel. However, Suite2P (package for cell segmentation) expects frame x channel x (spatial_1) x (spatial_2) dimensions in TIFF stack with 2 channels. Tiff larger than 4Go cannot be read by it either, and ome.tiff files solve this problem.

Would it therefore be possible to swap dimensions as above and save the result in ome.tiff?

Thanks!

sdaste avatar Feb 16 '24 17:02 sdaste