Investigate redesigning of filename/path lengths

[jeremycfd]

"The Windows API imposes a maximum filename length such that a filename, including the file path to get to the file, can't exceed between 255-260 characters." Filenames that violate this limit can cause problems for users on Windows machines. Some of the path/filename combinations generated automatically by the pipeline get quite long. We may want to shorten names where possible and/or include information on placing results in a base filepath for viewing when they encounter problems.