Philip Bradley

Hi Ruoxing, Thanks for your interest! I would recommend instead using the new tcrdist3 tool which is better documented and actively supported. https://github.com/kmayerb/tcrdist3 For calculating TCRdist distances you do not...

Hi poorvam sorry to hear that you are running into these issues. I'm afraid I don't have any insight into this but I am happy to report that a new...

Hi there, yes thanks for checking in. Take a look at https://github.com/kmayerb/tcrdist3 It's not exactly the same functionality but may have what you are looking for. Take care, Phil

Hi Gabrielle, What has worked for me in the past is to just add "*01" to all the gene names. There may still be a few that cause trouble, but...

Hi Alex, Sorry that things aren't clearer! This (ie, not starting from the beginning with complete read nucleotide sequences) is definitely one area that needs work. Just to clarify: do...

Sorry about that! Did you already run "python setup.py" from the tcr-dist-master/ directory? If so did it give any errors? And is this python 2 rather than python 3? Maybe...

Thanks for posting those error files. It looks like the software is not able to open the database files, so I think there must have been a problem downloading and/or...

Hi there, thanks for your interest! This should be ready, at least in preliminary form, in the next week or two. If longer, I will put an interim file up...

Hi there, sorry for the delays. We are having a terrible time uploading the files to zenodo-- neither the web interface nor the command line/python interface seem to be able...

Once you download the .tgz file, copy it into the alphafold_finetune/ folder and uncompress it, something like tar -xzvf datasets_alphafold_finetune_v1_2022-08-02.tgz that should create a new folder called datasets_alphafold_finetune/ and hopefully...