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Published 20 hours ago • verified publisher icon phac-nml

mob_recon does not reconstruct plasmids sequences

Open maricleon opened this issue 1 year ago • 0 comments

I am encountering an issue with the reconstruction of plasmid sequences using mob_recon. While all other files are successfully generated, the actual sequences remain absent. The recurring warning message I receive suggests a potential cause for this problem. Despite thoroughly checking my Blast installation and finding it apparently in order, the issue persists.

2024-01-20 10:06:39,240 root WARNING: No BLASTN results to parse from file test/__tmp/orit_blast_results.txt [in /home/company/leomar1/program_files/miniconda3/envs/tools/lib/python3.11/site-packages/mob_suite/blast/init.py:181]

maricleon avatar Jan 20 '24 10:01 maricleon