CEVOpen
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petermr
Contentmining of Open phytochemical literature for medicinal activities
# documentation Please give a *brief* overview (*.md) of the new functionality in https://github.com/petermr/CEVOpen/blob/master/searches/wikidata_lookup_python_code/compound_lookup_by_pubchem_cid.ipynb The `searches` branch is designed for the results of searches and subsequent analysis.
I've taken the liberty of editing the Wiki as I wanted to learn more about these oils and discovered an interesting review. As i come across more useful material I'll...
We have a minor gremlin in the way that the composition tables are put together. The extraction routine seems to be eliding species names with preceding text: `Table 1Chemical composition,...
The compound names in table columns are frequently ambiguous. The first table is https://github.com/petermr/CEVOpen/blob/master/articleAnalysis/oil186/raw/thyme.tsv ``` Compound Compound_dictionary_lookpup E2.0_compound_identifiers notes wikidata_identifier alpha-Thujene (-)-alpha-thujene ; (+)-alpha-thujene C764 ; C786 stereo-isomers of the...
Portentially useful https://www.intechopen.com/books/active-ingredients-from-aromatic-and-medicinal-plants/chemical-structure-quality-indices-and-bioactivity-of-essential-oil-constituents
Most of the HTML tables from EuropePMC have headers (` or `) but no explicit footers. However there is usually a transition in content. Typical example: ``` Table 1 Chemical...
# AMI-TABLES extracts compounds and percentages `ami-table` now uses a template file with regexes to extract `compound` and `percentage` columns from tables that contain both. The regex is fairly basic:...
# Introduction Chem4Word is a free plug-in for Microsoft Word. You can write semantic chemistry documents with it. Follow this posting to install Chem4Word and view the library of active...
@deadlyvices has been exploring this and reporting in email. ACTION: copy any relevant past emails here...
Here we discuss new dictionaries that may be useful to D.A.V.E.
