CEVOpen
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petermr
Project Strategy
CEVOpen
The CEVOpen project is based on:
- an open corpus of plant medicinal chemistry articles
- Open ContentMine dictionaries for many facets of this science
- a group of (largely unpaid volunteer) collaborators
- Open technology and resources (Github, open software, etc.)
all participants work on best endeavour - there are no formal contracts.
aims
There are a number of aims which have different weighting for different participants. Some may only work on their preferred interest; others will work on several aspects and create linking infrastructure.
show that Open Access can provide a critical mass of scientific knowledge.
create an intelligent knowledgebase
use semantic chemical technology (CML)
develop semantic ContentMine dictionaries
formalise activity data for plant oils in searchable form
show the value of automatically annotating semantic scientific articles
explore new science (patterns and relationships in data)
participants and interests
** Please edit **
All participlants are interested in collaborating.
ContentMine
- CM dictionaries for many topics
- automatic analysis of articles
- (PMR) geophytochemical research
NIPGR
(GY, AK, S-M, ?MK)
- cleaning and development of EssoilDB data
- restructuring
- automatic population of Essoil from literature
- prediction of oil and chemical activities
Verriclear Natural Skin Essentials Ltd. (aka. Verriclear)
EF - Emanuel Faria
- creation of knowledgebase of oils, sources, components, activities, targets and Minimum Effective Concentrations required to be fit for selected purpose
- understanding of constituent/activity relations to predict new activity profiles
- use of knowledgebase for likely new valuable oils for new products
Tiago
Development of automatic extraction of entities from articles.
- machine learning
- linguistaic patterns (e.g. Hearst, Tensorflow, Keras)
Chem4Word
- develop new "Library" for 2000 essential oils components
- develop chemical search tools
- develop plugins for researching information about related compounds
- multivariate techniques for compositin-activity
Blue Obelisk
(EgonW)
- map CEV onto CDK and other chemical informatics tools, including substructure
- explore pathways in the terpinome
- open article tools (e.g Scholia)
WHO have I missed?
I just updated my own information.
Peter, what is our definition of "intelligent" as in "create an intelligent knowledgebase"?
Might I also suggest: "show the value of creating and adopting accepted formatting standards for scientific articles"
On Thu, Oct 3, 2019 at 6:55 PM Emanuel Faria [email protected] wrote:
I just updated my own information.
Peter, what is our definition of "intelligent" as in "create an intelligent knowledgebase"?
https://en.wikipedia.org/wiki/Artificial_intelligence This is (very) "weak AI" where because we have a large knowledgebase we can ask questions in the general area of plant oil chemistry. I am being somewhat adventurous here - anything we build will be very limited - but if you add ML to a large knowledgebase then we can hopefully start to get patterns emerging. But Gita and I put in a proposal last year on AI and the terpinome.
Might I also suggest: "show the value of creating and adopting accepted
formatting standards for scientific articles"
sure. Just add it.
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-- Peter Murray-Rust Founder ContentMine.org and Reader Emeritus in Molecular Informatics Dept. Of Chemistry, University of Cambridge, CB2 1EW, UK
Sir, can we predict synergistic action of multiple extracts from different plants as PHF ( poly herbal formulation ). Many a times one compound or combinations of them synergises the activity of essential oil. On the other hand few compounds in combination makes the effect of essential oil feeble. Prediction of activity for PHF would be a good idea. ( this I am thinking as gone through multiple articles over essential oils and ocimum sanctum )
This is OUTSIDE CURRENT SCOPE. Until we have normalised the data any attempted science is a complete waste of time. You MUST stick to data extraction. You MUST NOT write articles about CEVOpen. Please acknowledge that you have received and understood this.
There is no scientific interpretation fo at least THREE months and maybe longer. Please
On Thu, Oct 3, 2019 at 9:26 PM Ambarish Kumar [email protected] wrote:
Sir, can we predict synergistic action of multiple extracts from different plants as PHF ( poly herbal formulation ). Many a times one compound or combinations of them synergises the activity of essential oil. On the other hand few compounds in combination makes the effect of essential oil feeble. Prediction of activity for PHF would be a good idea. ( this I am thinking as gone through multiple articles over essential oils and ocimum sanctum )
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-- Peter Murray-Rust Founder ContentMine.org and Reader Emeritus in Molecular Informatics Dept. Of Chemistry, University of Cambridge, CB2 1EW, UK
I'm going to suggest that in the meantime I start work on a conceptual map of these building blocks of systems. Just to see how they all fit together. Then people who know a lot better than me will at least have something to comment on.
I'm going to suggest that in the meantime I start work on a conceptual map of these building blocks of systems. Just to see how they all fit together. Then people who know a lot better than me will at least have something to comment on.
@deadlyvices did you see the concept map I posted today? (Sorry, from your user name I can’t tell if you were on the email chain. Nice to digitally meet you though!)
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Yes I did thanks. It looks really good. I'm downloading the tool now.
On Fri, Oct 4, 2019 at 10:43 PM Emanuel Faria [email protected] wrote:
I'm going to suggest that in the meantime I start work on a conceptual map of these building blocks of systems. Just to see how they all fit together. Then people who know a lot better than me will at least have something to comment on.
@deadlyvices https://github.com/deadlyvices did you see the concept map I posted today? (Sorry, from your user name I can’t tell if you were on the email chain. Nice to digitally meet you though!)
Sent with GitHawk http://githawk.com
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-- Clyde