Debian stretch/sid: pac - Perl_xs_apiversion_bootcheck [Solved]

[FelixDefrance]

As the issue #264 in sourceforge (but it's impossible to reply), I open this "github" issue with the solving! SourceForge: #264 cannot start pac - Perl_xs_apiversion_bootcheck

sourceforge.net/p/pacmanager/bugs/264/

The bug: When lunching pac, you got this error:

/usr/bin/perl: symbol lookup error: /opt/pac/lib/ex/vte64/auto/Gnome2/Vte/Vte.so: undefined symbol: Perl_xs_apiversion_bootcheck

I solve this problem by changing the Vte.so symbolic link to use Vte.so_64_5.022 instead of Vte.so_64_5.020

cd /opt/pac/lib/ex/vte64/auto/Gnome2/Vte
sudo rm Vte.so
sudo ln -s /opt/pac/lib/ex/vte64/auto/Gnome2/Vte/Vte.so_64_5.022 Vte.so

Enjoy, Félix.

[Jpsy]

For me the solution was even simpler:

cd /opt/pac/lib/ex/vte64/auto/Gnome2/Vte
sudo mv Vte.so Vte_ORG.so

Removing the Vte.so symlink allowed the more up-to-date system symlink to jump in and Pac started flawlessly on Debian 9 Stretch.

[Trinity2018]

Hi guys!

I have the same error: $ bowtie2 --threads 4 --local --no-unal -x /home/luz_garcia_longoria/workspace/referencegenome/sturnus_relictumgenome.fasta -q -k 1 --al aligned_reads.fastq -U /home/luz_garcia_longoria/workspace/*.fasta > aligned_host_parasite.sam

$perl: symbol lookup error: /var/bin/perl5/lib/perl5/x86_64-linux-thread-multi/auto/Cwd/Cwd.so: undefined symbol: Perl_xs_apiversion_bootcheck

$perl -v

$his is perl 5, version 26, subversion 2 (v5.26.2) built for x86_64-linux-thread-multi

The problem is that I am not the administrator so I cannot run the coman 'sudo'. Any other option to solve the problem?

Thank you in advance