medicaltorch
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perone
A medical imaging framework for Pytorch
I wonder how can rescale my dataset images to reduce ram load on GPU?
I have been trying to run the example code on SCGMChallenge dataset I see that the dice score is computed using scipy Since the preds and gt_npy are not boolean...
Hello all. May I know if how to use the captioned functions that was recently added? I could not find any examples or guide to follow. Very much appreciated! Here...
First of all, warm thanks to @perone et al. for developing medicaltorch. Really really useful tools. Based on your implementation, we would like to implement 2 new features in our...
Thank you for the great resource. I see this function `mt_datasets.SCGMChallenge2DTrain` was designed to read SCGM challenge data. How can I modify this to fit my own data? For example...
I try to resample input from `torch.Size([2, 1, 512, 512])` to `torch.Size([2, 1, 256, 256])` but that error occurred when get concat I don't understand why the y(x3) have this...
i have one folder for mask but it gives me error ` FileNotFoundError: No such file or no access: 'C:\~~~\nii format\site1-sc01-mask-r3.nii.gz'` what i should change in `train_dataset = mt_datasets.SCGMChallenge2DTrain(root_dir=ROOT_DIR_GMCHALLENGE, transform=composed_transform)...
Tests seem to fail at CircleCI. It seems that the `pytest` module could not be found inside the testing server virtual environment. As shown here: ```bash #!/bin/bash -eo pipefail ....
According to the PR (https://github.com/pytorch/pytorch/pull/16743), it is now possible to pin memory for custom datasets. We should definitely implement that in order to overlap GPU copies and computation.
