looper
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Looper does not populate environment variables for certain items in the pipestat config
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This works:
pep_config: metadata/pep_config.yaml
output_dir: ${RESULTS}
pipeline_interfaces:
- pipeline/pipeline_interface.yaml
pipestat:
pephub_path: donaldcampbelljr/human_seqcol_digests:default
This does not work:
pep_config: metadata/pep_config.yaml
output_dir: ${RESULTS}
pipeline_interfaces:
- pipeline/pipeline_interface.yaml
pipestat:
pephub_path: ${PEPHUB_PATH}