Does optimize_ab.py support multiple CDRs?

[TangYiChing]

Hello,

Could you suggest a way to optimize multiple CDRs? I've tried two options, but I need help to get them to work.

1. --design_contig "95-102"
2. (all)

File "/ab_opt/AbDock/src/tools/relax/pyrosetta_relaxer.py", line 97, in __call__
    if flexible_residue_first[-1] == ' ':
TypeError: 'NoneType' object is not subscriptable

!python optimize_ab.py \
    --num_gpus 1 \
    --process_per_gpu 1 \
    --docked_pose_dir "results/dock_multi/4o58.pdb_/MultipleCDRs" \
    --seq_design_dir "results/seq_design_fixed_pos/mutation/4o58_MultipleCDRs" \
    --design_model_ckpt "reproduction/seq_design_fixed_pos/300000.pt" \
    --screen_dir "results/screening/seq_design_fixed_pos/mutation/4o58_MultipleCDRs" \
    --dock_model_ckpt "reproduction/dock_multi_cdrs/300000.pt" \
    --heavy_chain_id "H" \
    --nums 10 \
    --pdb_suffix "4o58_rosetta"