Petr Danecek

Results 25 issues of Petr Danecek

The algorithm 3 (`pbwt -longWithin 5`) does not report some long matches. For example, in the following example: ``` 1:1010001 001100 4:1010001 001100 0:0110000 101010 2:0011000 110010 5:0011001 000010 3:1011001...

Hello, is there any chance for a 3.10 compatible version? Thanks for the extension btw, the autohide feature saved the new gnome for me.

It appears CRAM is not supported by Rsamtools. I wonder why is that? Samtools support CRAM natively, so I would naively expect this should be a trivial task, no? This...

-d, --delim .. add support for other delimiters, not just tab -h, --headers .. allow header lines in different formats. This is motivated by the common use of files with...

The VCF parser silently drops FORMAT fields when FORMAT column is ".". Perhaps it should complain when the corresponding sample fields are something else than "." in such case. See...