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The test `modflow_calc_DemoTest` fails with crash on Mac ARM
The test modflow_calc_DemoTest (with PCRaster version 4.4.1) fails on Mac ARM with a crash.
Extract from test log file:
239/275 Testing: modflow_calc_DemoTest
239/275 Test: modflow_calc_DemoTest
Command: "/opt/local/var/macports/build/_Users_nilason_ports_gis_pcraster/pcraster/work/build/bin/modflow_calc_DemoTest" "--catch_system_errors=no"
Directory: /opt/local/var/macports/build/_Users_nilason_ports_gis_pcraster/pcraster/work/build/source/modflow/calc
"modflow_calc_DemoTest" start time: Jan 17 14:41 CET
Output:
----------------------------------------------------------
Running 2 test cases...
[1;32;49m*** No errors detected
[0;39;49mlibc++abi: terminating due to uncaught exception of type std::__1::system_error: mutex lock failed: Invalid argument
<end of output>
Test time = 3.29 sec
----------------------------------------------------------
Test Failed.
"modflow_calc_DemoTest" end time: Jan 17 14:41 CET
"modflow_calc_DemoTest" time elapsed: 00:00:03
----------------------------------------------------------
The crash log:
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Termination Reason: Namespace SIGNAL, Code 6 Abort trap: 6
Terminating Process: modflow_calc_DemoTest [4553]
Application Specific Information:
abort() called
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x1854b60dc __pthread_kill + 8
1 libsystem_pthread.dylib 0x1854edcc0 pthread_kill + 288
2 libsystem_c.dylib 0x1853f9a40 abort + 180
3 libc++abi.dylib 0x1854a5070 abort_message + 132
4 libc++abi.dylib 0x185495110 demangling_terminate_handler() + 320
5 libobjc.A.dylib 0x18513b99c _objc_terminate() + 160
6 libc++abi.dylib 0x1854a4434 std::__terminate(void (*)()) + 16
7 libc++abi.dylib 0x1854a43d8 std::terminate() + 108
8 libgdal.34.3.8.3.dylib 0x108013650 GDALDriverManager::~GDALDriverManager() + 480
9 libgdal.34.3.8.3.dylib 0x108013dd8 GDALDriverManager::~GDALDriverManager() + 12
10 libgdal.34.3.8.3.dylib 0x108017ba4 GDALDestroyDriverManager + 36
11 libpcraster_model_engine.4.4.1.dylib 0x1052b4b1c dev::GDalClient::~GDalClient() + 104 (dev_GDalClient.cc:75)
12 libpcraster_model_engine.4.4.1.dylib 0x1051e6198 calc::LibraryClassNoQt::~LibraryClassNoQt() + 24 (calc_LibraryClass.h:35) [inlined]
13 libpcraster_model_engine.4.4.1.dylib 0x1051e6198 ClientHolder::~ClientHolder() + 24 (calc_globallibdefs.cc:73) [inlined]
14 libpcraster_model_engine.4.4.1.dylib 0x1051e6198 ClientHolder::~ClientHolder() + 24 (calc_globallibdefs.cc:73) [inlined]
15 libpcraster_model_engine.4.4.1.dylib 0x1051e6198 ClientHolder::~ClientHolder() + 40 (calc_globallibdefs.cc:73)
16 libpcraster_model_engine.4.4.1.dylib 0x1051e5d0c std::__1::default_delete<ClientHolder>::operator()[abi:v160006](ClientHolder*) const + 12 (unique_ptr.h:65) [inlined]
17 libpcraster_model_engine.4.4.1.dylib 0x1051e5d0c std::__1::unique_ptr<ClientHolder, std::__1::default_delete<ClientHolder>>::reset[abi:v160006](ClientHolder*) + 24 (unique_ptr.h:297) [inlined]
18 libpcraster_model_engine.4.4.1.dylib 0x1051e5d0c std::__1::unique_ptr<ClientHolder, std::__1::default_delete<ClientHolder>>::~unique_ptr[abi:v160006]() + 24 (unique_ptr.h:263) [inlined]
19 libpcraster_model_engine.4.4.1.dylib 0x1051e5d0c std::__1::unique_ptr<ClientHolder, std::__1::default_delete<ClientHolder>>::~unique_ptr[abi:v160006]() + 40 (unique_ptr.h:263)
20 libsystem_c.dylib 0x1853a9f98 __cxa_finalize_ranges + 476
21 libsystem_c.dylib 0x1853a9d20 exit + 44
22 libdyld.dylib 0x185506b80 dyld4::LibSystemHelpers::exit(int) const + 20
23 dyld 0x18516d12c start + 2436
See the details on the configuration:
---> Configuring pcraster
Executing: cd "/opt/local/var/macports/build/_Users_nicklas_ports_gis_pcraster/pcraster/work/build" && /opt/local/bin/cmake -G "CodeBlocks - Unix Makefiles" -DCMAKE_BUILD_TYPE=MacPorts -DCMAKE_INSTALL_PREFIX="/opt/local" -DCMAKE_INSTALL_NAME_DIR="/opt/local/lib" -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_C_COMPILER="$CC" -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_OBJC_COMPILER="$CC" -DCMAKE_OBJCXX_COMPILER="$CXX" -DCMAKE_POLICY_DEFAULT_CMP0025=NEW -DCMAKE_POLICY_DEFAULT_CMP0060=NEW -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_EXPORT_COMPILE_COMMANDS=ON -DCMAKE_MAKE_PROGRAM=/usr/bin/make -DCMAKE_MODULE_PATH="/opt/local/share/cmake/Modules" -DCMAKE_PREFIX_PATH="/opt/local/share/cmake/Modules" -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH="/opt/local/lib" -Wno-dev -DPCRASTER_BUILD_MLDD=ON -DPCRASTER_BUILD_MOC=ON -DPCRASTER_BUILD_MULTICORE=OFF -DPCRASTER_WITH_FLAGS_IPO=OFF -DPython3_EXECUTABLE=/opt/local/Library/Frameworks/Python.framework/Versions/3.11/bin/python3.11 -DPCRASTER_PYTHON_INSTALL_DIR=/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages -DPCRASTER_BUILD_TEST=ON -DBOOST_ROOT=/opt/local/libexec/boost/1.76 -DBOOSTROOT=/opt/local/libexec/boost/1.76 -DBOOST_INCLUDEDIR=/opt/local/libexec/boost/1.76/include -DBOOST_LIBRARYDIR=/opt/local/libexec/boost/1.76/lib -DBOOST_INCLUDE_DIR=/opt/local/libexec/boost/1.76/include -DBOOST_LIBRARY_DIR=/opt/local/libexec/boost/1.76/lib -DBOOST_LIB_DIR=/opt/local/libexec/boost/1.76/lib -DBoost_NO_SYSTEM_PATHS=ON -DBoost_INCLUDE_DIR=/opt/local/libexec/boost/1.76/include -DBoost_DIR=/opt/local/libexec/boost/1.76 -DCMAKE_OSX_ARCHITECTURES="arm64" -DCMAKE_OSX_DEPLOYMENT_TARGET="14.0" -DCMAKE_OSX_SYSROOT="/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk" -DCMAKE_STRIP:FILEPATH=/bin/echo /opt/local/var/macports/build/_Users_nicklas_ports_gis_pcraster/pcraster/work/pcraster-4.4.1
-- The C compiler identification is AppleClang 15.0.0.15000100
-- The CXX compiler identification is AppleClang 15.0.0.15000100
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Boost: /opt/local/libexec/boost/1.76/include (found suitable version "1.76.0", minimum required is "1.71") found components: date_time unit_test_framework
-- CPM: adding package xsd@0 (538fb327e13c3c9d3e7ae4a7dd06098d12667f2a)
-- Applying fix for XSD serialization-header.txx
-- Found OpenGL: /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/System/Library/Frameworks/OpenGL.framework
-- Found Qt5:
-- version: 5.15.12
-- Found XercesC: /opt/local/lib/libxerces-c.dylib (found version "3.2.4")
-- Found GDAL: /opt/local/lib/libgdal.dylib (found suitable version "3.8.3", minimum required is "2.4")
-- Found GDAL:
-- version: 3.8.3
-- libraries: /opt/local/lib/libgdal.dylib
-- includes: /opt/local/include
-- Found Python3: /opt/local/Library/Frameworks/Python.framework/Versions/3.11/bin/python3.11 (found version "3.11.7") found components: Interpreter Development NumPy Development.Module Development.Embed
-- Found Python3:
-- Interpreter ID: Python
-- version: 3.11.7
-- executable: /opt/local/Library/Frameworks/Python.framework/Versions/3.11/bin/python3.11
-- site-lib: /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages
-- includes: /opt/local/Library/Frameworks/Python.framework/Versions/3.11/include/python3.11
-- NumPy:
-- version: 1.26.2
-- includes: /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/include
-- Looking for wsyncup in /opt/local/lib/libcurses.dylib
-- Looking for wsyncup in /opt/local/lib/libcurses.dylib - found
-- Looking for cbreak in /opt/local/lib/libncursesw.dylib
-- Looking for cbreak in /opt/local/lib/libncursesw.dylib - found
-- Looking for nodelay in /opt/local/lib/libncursesw.dylib
-- Looking for nodelay in /opt/local/lib/libncursesw.dylib - found
-- Found Curses: /opt/local/lib/libncursesw.dylib
-- Found ncurses:
-- libraries: /opt/local/lib/libncursesw.dylib/opt/local/lib/libformw.dylib
-- includes : /opt/local/include
-- Found PYTHON_MODULE_PSUTIL: /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/psutil
-- Found SQLite3: /opt/local/include (found version "3.44.2")
-- Looking for C++ include pybind11/pybind11.h
-- Looking for C++ include pybind11/pybind11.h - found
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Performing Test HAS_FLTO_THIN
-- Performing Test HAS_FLTO_THIN - Success
-- Found pybind11: /opt/local/include (found version "2.10.3")
-- CPM: adding package rasterformat@0 (d5d1c5199607b5ef9a12472eec5b018d5e18693f)
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- -----------------------------------------------------------
-- PCRaster configuration summary:
-- Version: 4.4.1
-- Installation directories:
-- Binaries: /opt/local/bin
-- Libraries: /opt/local/lib
-- Python: /opt/local//opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages
-- Build options:
-- Aguila: ON
-- OpenGL support: ON
-- Multicore: OFF
-- Modflow: ON
-- Build mf2005: OFF
-- Oldcalc: ON
-- Tests: ON
-- Documentation: OFF
-- Experimental features:
-- BlockPython: ON
-- Moc: ON
-- Mldd: ON
-- Build configuration:
-- Type(s): MacPorts
-- Flags:
-- Native: ON
-- IPO: OFF
-- -----------------------------------------------------------
-- Configuring done
-- Generating done
