Pablo Conesa
Pablo Conesa
This is not fixed in devel! hmmmm @josuegbl ?
Hi! @tarhil Scipion should be able to use eman2.3 for the thumbnails
I see....Do you see any hint in the logs of the monitor summary?
Do you see any log lines like: "Generating images for mic xxxxx" ?
Which protocols did you select in the summary monitor?
Thank you tarhil. I fail to see what can be wrong there. Is there any chance we can ssh your machine to check more technical stuff? El jue., 26 sept....
Thanks @tarhil , can you confirm that the /Runs/XXXXProtMonitorSummary/extra/imgXXXThumbs Are all 3 empty? If not the issue is around the html....otherwise we should focus on the generation of it.
May be this will work: ls /data/test/Krios/2019-09-24_AFIS/Krios_AFIS/Runs/000190_ProtMonitorSummary/extra/Krios_AFIS/img*
Thanks again, @tarhil .....let's try to test the thumbnail generation. In a terminal type (adapt the path, please): `scipion python -c "from pyworkflow.em.convert import ImageHandler; ih = ImageHandler(); ih.computeThumbnail('/extra/data/tests/relion13_tutorial/betagal/Micrographs/Falcon_2012_06_12-16_59_12_0.mrc','/tmp/thumb2.png')" `
This should generate a thumbnail in a similar way as the summary protocol does. It should be at /tmp/thumb2.png Please, replace /extra/data/tests/relion13_tutorial/betagal/Micrographs/Falcon_2012_06_12-16_59_12_0.mrc with a valid path to a micrograph. If...