sdmTMB
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Expand unit testing
Here's a start based on the last report in rough order of importance.
- [x] anisotropy with delta models
- [x] sdmTMB_simulate() with IID or AR1 or RW fields
- [x] add_barrier_mesh
- [x] mcmc residuals type
- [x] simulate() with delta models and model = 1 or model = 2
- [ ] some more cached parameter values, prediction values, and index values (add delta ones)
- [x] nlminb_loops
- [x] delta_truncated_nbinom1
- [x] tidy() with models that have breakpts
- [ ] sanity() with high gradients or NAs for SEs or a random field sigma < 0.001
- [x] wide format get_cog
- [ ] spread_sims basics
- [x] plot_pc_matern basics
- [ ] Also, outside of the testthat folder (maybe within a folder within
inst
for now?): testing against VAST
Note, set:
Sys.setenv(NOT_CRAN = "true")
for covr to realize not on CRAN.