VariantNET
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pb-jchin
A simple neural network for calling het-/hom-variants from alignments of single molecule reads to a reference
Traceback (most recent call last): File "get_SNP_candidates.py", line 172, in make_variant_candidates(args) File "get_SNP_candidates.py", line 103, in make_variant_candidates pileup[pos][b] += 1 KeyError: 'N' samtools view: writing to standard output failed: Broken...
> A target array with shape (500, 8) was passed for an output of shape (None, 4) while using as loss `mean_squared_error`. This loss expects targets to have the same...
In variants_chr21 you have 10270925 T A 0 1 The 0 means that it is heterozygous? What does the 1 in the last column mean? Thanks!
Hi Jason I just read your interesting story in Medium and try to run the ipython notebook. However, the example dataset in Dropbox (https://www.dropbox.com/s/fwyvu24hdxqv06i/VariantNet_testing_data.tgz) is not available. How big are...
