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GWAS tracks not found

Open heimannch opened this issue 5 months ago • 3 comments

Hello! I have a new issue :)

When I try to add a GWAS track, using the 1.0.5 version, a Not Found error is raised: image

If I check the tracks folder, there is no new file for the GWAS track. The previous version (1.5.9009) is working fine.

Some extra information:

> sessionInfo()
R version 4.2.0 (2022-04-22)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS 13.5.2

Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] parallel  stats     graphics  grDevices datasets  utils     methods   base     

other attached packages:
 [1] magrittr_2.0.3                shiny_1.9.1                   iatlas.app_0.0.0.9000        
 [4] ImmuneSubtypeClassifier_0.1.0 stringr_1.5.1                 plotROC_2.2.1                
 [7] ggplot2_3.5.1                 xgboost_1.6.0.1               testthat_3.1.4               
[10] devtools_2.4.3                usethis_2.1.5                

loaded via a namespace (and not attached):
  [1] utf8_1.2.2                shinydashboard_0.7.2      tidyselect_1.2.1          htmlwidgets_1.5.4        
  [5] grid_4.2.0                Rtsne_0.16                pROC_1.18.0               iatlas.modules_0.9.0     
  [9] munsell_0.5.0             codetools_0.2-19          sortable_0.4.5            DT_0.23                  
 [13] future_1.26.1             withr_2.5.0               colorspace_2.0-3          knitr_1.39               
 [17] rstudioapi_0.13           stats4_4.2.0              ggsignif_0.6.3            listenv_0.8.0            
 [21] urltools_1.7.3            GenomeInfoDbData_1.2.8    iatlasGraphQLClient_0.2.8 KMsurv_0.1-5             
 [25] farver_2.1.0              bit64_4.0.5               rprojroot_2.0.3           parallelly_1.31.1        
 [29] vctrs_0.6.4               generics_0.1.2            lambda.r_1.2.4            ipred_0.9-12             
 [33] xfun_0.31                 R6_2.5.1                  markdown_1.1              GenomeInfoDb_1.32.4      
 [37] grImport2_0.2-0           bitops_1.0-7              arrow_8.0.0               cachem_1.1.0             
 [41] assertthat_0.2.1          vroom_1.6.5               promises_1.2.0.1          shinycssloaders_1.1.0    
 [45] scales_1.3.0              nnet_7.3-18               gtable_0.3.0              globals_0.15.0           
 [49] processx_3.5.3            timeDate_3043.102         rlang_1.1.4               splines_4.2.0            
 [53] rstatix_0.7.0             lazyeval_0.2.2            ModelMetrics_1.2.2.2      concordanceIndex_0.1     
 [57] broom_0.8.0               checkmate_2.1.0           yaml_2.3.5                BiocManager_1.30.25      
 [61] reshape2_1.4.4            abind_1.4-5               crosstalk_1.2.0           backports_1.4.1          
 [65] rsconnect_1.1.1           httpuv_1.6.5              caret_6.0-92              ggmosaic_0.3.3           
 [69] tools_4.2.0               lava_1.6.10               graphql_1.5.1             ghql_0.1.0               
 [73] ellipsis_0.3.2            jquerylib_0.1.4           RColorBrewer_1.1-3        BiocGenerics_0.42.0      
 [77] sessioninfo_1.2.2         Rcpp_1.0.8.3              plyr_1.8.7                base64enc_0.1-3          
 [81] zlibbioc_1.42.0           purrr_1.0.2               RCurl_1.98-1.6            ps_1.7.0                 
 [85] prettyunits_1.1.1         ggpubr_0.4.0              rpart_4.1.19              viridis_0.6.5            
 [89] fontawesome_0.5.2         zoo_1.8-10                S4Vectors_0.34.0          ggrepel_0.9.1            
 [93] cluster_2.1.4             fs_1.5.2                  crul_1.5.0                data.table_1.14.2        
 [97] futile.options_1.0.1      triebeard_0.4.1           survminer_0.4.9           pkgload_1.2.4            
[101] randomcoloR_1.1.0.1       hms_1.1.1                 shinyjs_2.1.0             mime_0.12                
[105] evaluate_0.15             xtable_1.8-4              XML_3.99-0.9              jpeg_0.1-9               
[109] IRanges_2.30.1            gridExtra_2.3             shape_1.4.6               wrapr_2.0.9              
[113] compiler_4.2.0            tibble_3.2.1              V8_4.2.0                  crayon_1.5.3             
[117] htmltools_0.5.8.1         iatlas.modules2_0.6.1     later_1.3.0               tzdb_0.3.0               
[121] tidyr_1.3.1               lubridate_1.8.0           formatR_1.14              MASS_7.3-57              
[125] Matrix_1.6-1.1            car_3.0-13                readr_2.1.5               brio_1.1.3               
[129] cli_3.6.1                 gower_1.0.1               km.ci_0.5-6               GenomicRanges_1.48.0     
[133] pkgconfig_2.0.3           plotly_4.10.4             recipes_0.2.0             foreach_1.5.2            
[137] bslib_0.8.0               hardhat_0.2.0             XVector_0.36.0            prodlim_2019.11.13       
[141] snakecase_0.11.1          callr_3.7.0               digest_0.6.29             graph_1.74.0             
[145] httpcode_0.3.0            rmarkdown_2.14            survMisc_0.5.6            cyjShiny_1.0.35          
[149] curl_5.1.0                lifecycle_1.0.4           nlme_3.1-162              jsonlite_1.8.0           
[153] carData_3.0-5             futile.logger_1.4.3       desc_1.4.1                viridisLite_0.4.0        
[157] fansi_1.0.3               pillar_1.9.0              igvShiny_1.0.5            lattice_0.20-45          
[161] fastmap_1.2.0             httr_1.4.3                learnr_0.10.1             pkgbuild_1.3.1           
[165] survival_3.5-3            glue_1.6.2                remotes_2.4.2             png_0.1-7                
[169] iterators_1.0.14          glmnet_4.1-4              bit_4.0.4                 sass_0.4.9               
[173] class_7.3-21              stringi_1.7.6             memoise_2.0.1             renv_1.0.3               
[177] dplyr_1.1.4               future.apply_1.9.0 

heimannch avatar Sep 05 '24 19:09 heimannch