bamsnap
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parklab
Hi, I am trying to use bamsnap with long read data from Nanopore aligned reads using minimap. I do not manage to get any output and the exit error is...
I was eager to try your tool and the examples in the repository work well. I tried directly plotting from your examples as well as re-alignment (minimap2) on hg38 with...
Is there a limit on the size of genomic region that can be plotted using bamsnap? My attempts to plot 1.5MB region failed with this error: ```py Process proc 1:...
Hello, is it possible to specify a custom annotation file instead of relying on the shipped ones? Because, the gene track plotting runs into error when using custom references, or...
Hi! This is a very nice tool that I just learnt about. Looking in the docs, this is offered as a command line tool, which is nice. But, given that...
HTML created for multi-sample snaps can't load the snaps. The template is not updated and expects one snap for each sample while the program creates a single snap with all...
This addresses issue #18. It fixes problems rendering reference sequences with lowercase characters. The fix comes in two parts. First is an expansion of the `COLOR` dictionary to associate hex...
The naming scheme introduced in a9c219dfe92b08d8419c0610c102ae07430c4d7e must also be applied to the html files.
my command was bamsnap -bam ./NA12878.final.cram -pos chr11:12314 -out ./test.png It worked well but suddenly it didn't work with error below. Traceback (most recent call last): File "/usr/lib64/python3.6/multiprocessing/process.py", line 258,...
bamsnap runs into error when `-process` was used, although it still successfully writes the output file. WIthout `-process`, the same command runs successfully. ```sh Traceback (most recent call last): File...