HiNT

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when i try to test the code by testdata,，it has some question like"MemoryError: Unable to allocate 18.7 GiB for an array with shape (50095, 50095) and data type float64".how can...

ningwei-wei

Hi, thank you for your good software. I am studying plant 3D genome. For both HiNT-CNV and HiNT-TL, the parameter **--refdir** directs to specific human genomes. Does that mean this...

clementmo

Hi, I'm trying to run hint cnv but keep getting this error. When I run hint after installation, i don't get any error that it installed wrong. -bash:login01:/broad/hptmp/mtegtmey/HiNT/bin 1101 $...

mtegtmey

Enzyme used in Hi-C experiment

1

Hi, I want to use Hint TL now, but one problem is the enzymes I can choose in the software are DpnII,MboI,HindIII. We use arima in our experiment, so what...

ckj199591

I downloaded the fastq files, reference files and background matrix for hg19 in test directory. then I ran successfully the "pre" step. When I ran the tl command, I got...

snowsite

hint cnv -f juicer: TypeError: 'int' object is not subscriptable

2

Hi, I'm experiencing the following error when I'm running `hint cnv` using a juicer `.hic` file as input, both with my own and the test dataset. ``` $ hint cnv...

sidiropoulos

Hello, Thanks for developing hint, the paper is super interesting! I tried to identify translocations for 12 samples, 6 completed successfully and for 6 of them I am getting the...

areyesq89

ValueError: row index exceeds matrix dimensions

1

Hi all, I am trying to run HiNT on the example dataset, but it keeps failing. I installed hint from Conda, using the following steps: - `conda create -p $(pwd)/hint-env`...

walidabualafia

HiNT is really powerful. Can you show how to make reference files for other species, which will extend its applications.

xinghua1001