pip installation fails with this ERROR: Could not install packages due to an OSError: [Errno 30] Read-only file system: '/opt/python/3.9.14/lib/python3.9/site-packages/texttable.py'

[bioarpit1]

Collecting scarf Downloading scarf-0.26.3-py3-none-any.whl (200 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 200.3/200.3 KB 3.7 MB/s eta 0:00:00a 0:00:01 Collecting hnswlib Downloading hnswlib-0.7.0.tar.gz (33 kB) Installing build dependencies ... done Getting requirements to build wheel ... done Preparing metadata (pyproject.toml) ... done Requirement already satisfied: importlib-metadata in /opt/python/3.9.14/lib/python3.9/site-packages (from scarf) (6.5.0) Collecting scikit-network Downloading scikit_network-0.30.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.2/7.2 MB 54.6 MB/s eta 0:00:0000:0100:01 Collecting scikit-learn Using cached scikit_learn-1.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.6 MB) Collecting umap-learn Using cached umap-learn-0.5.3.tar.gz (88 kB) Preparing metadata (setup.py) ... done Collecting dask>=2021.8.1 Downloading dask-2023.4.1-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 42.3 MB/s eta 0:00:00 Collecting ipython-autotime Downloading ipython_autotime-0.3.1-py2.py3-none-any.whl (6.8 kB) Collecting pybind11 Using cached pybind11-2.10.4-py3-none-any.whl (222 kB) Collecting gensim Downloading gensim-4.3.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (26.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 26.5/26.5 MB 52.5 MB/s eta 0:00:0000:0100:01 Collecting loguru Downloading loguru-0.7.0-py3-none-any.whl (59 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.0/60.0 KB 3.4 MB/s eta 0:00:00 Collecting pandas Downloading pandas-2.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.4/12.4 MB 69.7 MB/s eta 0:00:0000:0100:01 Collecting numba Using cached numba-0.56.4-cp39-cp39-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (3.5 MB) Collecting leidenalg Downloading leidenalg-0.9.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.3/1.3 MB 46.0 MB/s eta 0:00:00 Requirement already satisfied: ipywidgets in /opt/python/3.9.14/lib/python3.9/site-packages (from scarf) (8.0.6) Collecting numpy Using cached numpy-1.24.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB) Collecting datashader Downloading datashader-0.14.4-py2.py3-none-any.whl (18.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.2/18.2 MB 59.2 MB/s eta 0:00:0000:0100:01 Collecting numcodecs Downloading numcodecs-0.11.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (6.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.7/6.7 MB 75.7 MB/s eta 0:00:00:00:0100:01 Collecting joblib Using cached joblib-1.2.0-py3-none-any.whl (297 kB) Collecting tqdm Using cached tqdm-4.65.0-py3-none-any.whl (77 kB) Collecting h5py>=3.3.0 Using cached h5py-3.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.7 MB) Collecting networkx Using cached networkx-3.1-py3-none-any.whl (2.1 MB) Requirement already satisfied: setuptools in /opt/python/3.9.14/lib/python3.9/site-packages (from scarf) (67.6.1) Collecting seaborn Using cached seaborn-0.12.2-py3-none-any.whl (293 kB) Collecting statsmodels Using cached statsmodels-0.13.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.9 MB) Collecting kneed Downloading kneed-0.8.3-py3-none-any.whl (10 kB) Requirement already satisfied: requests in /opt/python/3.9.14/lib/python3.9/site-packages (from scarf) (2.28.2) Collecting matplotlib Using cached matplotlib-3.7.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.6 MB) Collecting cmocean Downloading cmocean-3.0.3-py3-none-any.whl (222 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 222.1/222.1 KB 15.3 MB/s eta 0:00:00 Collecting scipy Using cached scipy-1.10.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (34.5 MB) Collecting zarr Downloading zarr-2.14.2-py3-none-any.whl (203 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 203.3/203.3 KB 14.5 MB/s eta 0:00:00 Collecting threadpoolctl Using cached threadpoolctl-3.1.0-py3-none-any.whl (14 kB) Requirement already satisfied: packaging in /opt/python/3.9.14/lib/python3.9/site-packages (from scarf) (23.1) Requirement already satisfied: click>=8.0 in /opt/python/3.9.14/lib/python3.9/site-packages (from dask>=2021.8.1->scarf) (8.1.3) Requirement already satisfied: pyyaml>=5.3.1 in /opt/python/3.9.14/lib/python3.9/site-packages (from dask>=2021.8.1->scarf) (6.0) Collecting fsspec>=2021.09.0 Downloading fsspec-2023.4.0-py3-none-any.whl (153 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 154.0/154.0 KB 10.0 MB/s eta 0:00:00 Collecting partd>=1.2.0 Downloading partd-1.4.0-py3-none-any.whl (18 kB) Collecting toolz>=0.10.0 Downloading toolz-0.12.0-py3-none-any.whl (55 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 55.8/55.8 KB 3.4 MB/s eta 0:00:00 Collecting cloudpickle>=1.5.0 Downloading cloudpickle-2.2.1-py3-none-any.whl (25 kB) Requirement already satisfied: zipp>=0.5 in /opt/python/3.9.14/lib/python3.9/site-packages (from importlib-metadata->scarf) (3.15.0) Requirement already satisfied: python-dateutil>=2.8.2 in /opt/python/3.9.14/lib/python3.9/site-packages (from pandas->scarf) (2.8.2) Collecting pytz>=2020.1 Using cached pytz-2023.3-py2.py3-none-any.whl (502 kB) Collecting tzdata>=2022.1 Using cached tzdata-2023.3-py2.py3-none-any.whl (341 kB) Collecting xarray Downloading xarray-2023.4.2-py3-none-any.whl (979 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 979.5/979.5 KB 40.7 MB/s eta 0:00:00 Collecting colorcet Downloading colorcet-3.0.1-py2.py3-none-any.whl (1.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 52.4 MB/s eta 0:00:00 Collecting pillow Using cached Pillow-9.5.0-cp39-cp39-manylinux_2_28_x86_64.whl (3.4 MB) Collecting pyct Downloading pyct-0.5.0-py2.py3-none-any.whl (15 kB) Collecting datashape Downloading datashape-0.5.2.tar.gz (76 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 76.5/76.5 KB 4.5 MB/s eta 0:00:00 Preparing metadata (setup.py) ... done Collecting param Downloading param-1.13.0-py2.py3-none-any.whl (87 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 87.3/87.3 KB 5.2 MB/s eta 0:00:00 Collecting numpy Using cached numpy-1.23.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.1 MB) Collecting llvmlite<0.40,>=0.39.0dev0 Using cached llvmlite-0.39.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (34.6 MB) Collecting smart-open>=1.8.1 Downloading smart_open-6.3.0-py3-none-any.whl (56 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 56.8/56.8 KB 3.6 MB/s eta 0:00:00 Requirement already satisfied: ipython in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython-autotime->scarf) (8.12.0) Requirement already satisfied: traitlets>=4.3.1 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipywidgets->scarf) (5.9.0) Requirement already satisfied: ipykernel>=4.5.1 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipywidgets->scarf) (6.22.0) Requirement already satisfied: jupyterlab-widgets~=3.0.7 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipywidgets->scarf) (3.0.7) Requirement already satisfied: widgetsnbextension~=4.0.7 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipywidgets->scarf) (4.0.7) Collecting igraph<0.11,>=0.10.0 Downloading igraph-0.10.4-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.3/3.3 MB 61.7 MB/s eta 0:00:00:00:01 Collecting fonttools>=4.22.0 Using cached fonttools-4.39.3-py3-none-any.whl (1.0 MB) Collecting importlib-resources>=3.2.0 Using cached importlib_resources-5.12.0-py3-none-any.whl (36 kB) Collecting contourpy>=1.0.1 Using cached contourpy-1.0.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (299 kB) Collecting kiwisolver>=1.0.1 Using cached kiwisolver-1.4.4-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.6 MB) Collecting pyparsing>=2.3.1 Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB) Collecting cycler>=0.10 Using cached cycler-0.11.0-py3-none-any.whl (6.4 kB) Collecting entrypoints Downloading entrypoints-0.4-py3-none-any.whl (5.3 kB) Requirement already satisfied: idna<4,>=2.5 in /opt/python/3.9.14/lib/python3.9/site-packages (from requests->scarf) (3.4) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /opt/python/3.9.14/lib/python3.9/site-packages (from requests->scarf) (1.26.15) Requirement already satisfied: charset-normalizer<4,>=2 in /opt/python/3.9.14/lib/python3.9/site-packages (from requests->scarf) (3.1.0) Requirement already satisfied: certifi>=2017.4.17 in /opt/python/3.9.14/lib/python3.9/site-packages (from requests->scarf) (2022.12.7) Collecting patsy>=0.5.2 Using cached patsy-0.5.3-py2.py3-none-any.whl (233 kB) Collecting pynndescent>=0.5 Using cached pynndescent-0.5.10.tar.gz (1.1 MB) Preparing metadata (setup.py) ... done Collecting fasteners Downloading fasteners-0.18-py3-none-any.whl (18 kB) Collecting asciitree Downloading asciitree-0.3.3.tar.gz (4.0 kB) Preparing metadata (setup.py) ... done Collecting texttable>=1.6.2 Downloading texttable-1.6.7-py2.py3-none-any.whl (10 kB) Requirement already satisfied: debugpy>=1.6.5 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (1.6.7) Requirement already satisfied: jupyter-core!=5.0.,>=4.12 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (5.3.0) Requirement already satisfied: nest-asyncio in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (1.5.6) Requirement already satisfied: jupyter-client>=6.1.12 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (8.2.0) Requirement already satisfied: matplotlib-inline>=0.1 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (0.1.6) Requirement already satisfied: pyzmq>=20 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (25.0.2) Requirement already satisfied: tornado>=6.1 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (6.3) Requirement already satisfied: comm>=0.1.1 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (0.1.3) Requirement already satisfied: psutil in /opt/python/3.9.14/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets->scarf) (5.9.5) Requirement already satisfied: pickleshare in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (0.7.5) Requirement already satisfied: prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (3.0.38) Requirement already satisfied: stack-data in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (0.6.2) Requirement already satisfied: jedi>=0.16 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (0.18.2) Requirement already satisfied: decorator in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (5.1.1) Requirement already satisfied: backcall in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (0.2.0) Requirement already satisfied: pygments>=2.4.0 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (2.15.1) Requirement already satisfied: pexpect>4.3 in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (4.8.0) Requirement already satisfied: typing-extensions in /opt/python/3.9.14/lib/python3.9/site-packages (from ipython->ipython-autotime->scarf) (4.5.0) Collecting locket Downloading locket-1.0.0-py2.py3-none-any.whl (4.4 kB) Requirement already satisfied: six in /opt/python/3.9.14/lib/python3.9/site-packages (from patsy>=0.5.2->statsmodels->scarf) (1.16.0) Collecting multipledispatch>=0.4.7 Downloading multipledispatch-0.6.0-py3-none-any.whl (11 kB) Requirement already satisfied: parso<0.9.0,>=0.8.0 in /opt/python/3.9.14/lib/python3.9/site-packages (from jedi>=0.16->ipython->ipython-autotime->scarf) (0.8.3) Requirement already satisfied: platformdirs>=2.5 in /opt/python/3.9.14/lib/python3.9/site-packages (from jupyter-core!=5.0.,>=4.12->ipykernel>=4.5.1->ipywidgets->scarf) (3.2.0) Requirement already satisfied: ptyprocess>=0.5 in /opt/python/3.9.14/lib/python3.9/site-packages (from pexpect>4.3->ipython->ipython-autotime->scarf) (0.7.0) Requirement already satisfied: wcwidth in /opt/python/3.9.14/lib/python3.9/site-packages (from prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30->ipython->ipython-autotime->scarf) (0.2.6) Requirement already satisfied: executing>=1.2.0 in /opt/python/3.9.14/lib/python3.9/site-packages (from stack-data->ipython->ipython-autotime->scarf) (1.2.0) Requirement already satisfied: asttokens>=2.1.0 in /opt/python/3.9.14/lib/python3.9/site-packages (from stack-data->ipython->ipython-autotime->scarf) (2.2.1) Requirement already satisfied: pure-eval in /opt/python/3.9.14/lib/python3.9/site-packages (from stack-data->ipython->ipython-autotime->scarf) (0.2.2) Using legacy 'setup.py install' for umap-learn, since package 'wheel' is not installed. Using legacy 'setup.py install' for pynndescent, since package 'wheel' is not installed. Using legacy 'setup.py install' for asciitree, since package 'wheel' is not installed. Using legacy 'setup.py install' for datashape, since package 'wheel' is not installed. Building wheels for collected packages: hnswlib Building wheel for hnswlib (pyproject.toml) ... done Created wheel for hnswlib: filename=hnswlib-0.7.0-cp39-cp39-linux_x86_64.whl size=2157307 sha256=cbeeabf81c4880186a8985acb0844ce35ee916ddcaea5eec2846c68754f62c85 Stored in directory: /nfs/amishra/.cache/pip/wheels/ba/26/61/fface6c407f56418b3140cd7645917f20ba6b27d4e32b2bd20 Successfully built hnswlib Installing collected packages: texttable, pytz, asciitree, tzdata, tqdm, toolz, threadpoolctl, smart-open, pyparsing, pybind11, pillow, param, numpy, networkx, multipledispatch, loguru, locket, llvmlite, kiwisolver, joblib, importlib-resources, igraph, fsspec, fonttools, fasteners, entrypoints, cycler, cloudpickle, scipy, pyct, patsy, partd, pandas, numcodecs, numba, leidenalg, hnswlib, h5py, datashape, contourpy, zarr, xarray, statsmodels, scikit-network, scikit-learn, matplotlib, kneed, gensim, dask, colorcet, seaborn, pynndescent, ipython-autotime, datashader, cmocean, umap-learn, scarf ERROR: Could not install packages due to an OSError: [Errno 30] Read-only file system: '/opt/python/3.9.14/lib/python3.9/site-packages/texttable.py'

WARNING: You are using pip version 22.0.4; however, version 23.1 is available. You should consider upgrading via the '/opt/python/3.9.14/bin/python3.9 -m pip install --upgrade pip' command. Note: you may need to restart the kernel to use updated packages. ​