paoloczi

The assembly summary shows that 76% of the reads are isolated in the read graph, and under these conditions we cannot expect a good quality assembly. This is probably due...

To confirm my above comment regarding an insufficient number of alignments: that assembly has about 279,000 alignments for 252,000 reads, so just more than one alignment per read. In a...

Shasta development moved to a new repository (see the [README](https://github.com/chanzuckerberg/shasta) for more information). I created a new issue in the new repository, paoloshasta/shasta#1, to reflect this request. If additional discussion...

Unfortunately we don't yet have a Shasta configuration for Q20 reads. I did run some assemblies with Q20 reads but those were some time ago and probably therefore irrelevant for...

Actually from that assembly summary I see that the assembly is using 183 Gb of reads (after discarding 41 Gb of reads shorter than 10 Kb). So you are around...

It looks like at least some changes to MinHash parameters will be needed. The `Nanopore-Oct2021` configuration has the following: ``` [MinHash] minBucketSize = 5 maxBucketSize = 30 ``` But from...

I added the enhancement label as a reminder that this is a request for a config usable for Q20 reads.

Shasta development moved to a new repository (see the [README](https://github.com/chanzuckerberg/shasta) for more information). I created a new issue in the new repository, paoloshasta/shasta#1, to reflect this request. If additional discussion...

Thank you for this. Regarding using cmake to find the BLAS and Lapack libraries: @ocaisa already made the same suggestion in the past, but I discovered that, because of a...

Thank you for your thoughts. I plan to keep the static executable as the main release artifact, because of the ease with which it can be used on Linux distributions...