paoloczi

Yes, no problem running without options. The original Bandage also had problems if any options were specified, even though there were several documented options. I filed an issue on that...

As I mentioned when originally opening this issue, I have the same problem on Ubuntu.

I recently upgraded my laptop to Ubuntu 22.04, and I just tried again, using your latest release. If I run it without options I get this message, but then it...

Here is what I get with the build you suggested. Without options, it runs fine, I get the same message about `WAYLAND_DISPLAY`, and it can display a graph without problem....

This is what I get if I set that and I invoke it with `--help`: ``` export QT_QPA_PLATFORM=xcb ./BandageNG-f3ca6e0-x86_64.AppImage --help qt.qpa.plugin: Could not find the Qt platform plugin "minimal" in...

Just to clarify - I was running that locally from my Ubuntu 22.04 laptop, with a Gnome environment running on top of Wayland.

Can you do rainbow plots from BED? if so, that is a reasonable temporary solution until you can implement native `minimap2` support.

In my experience, Blast tends to be very slow, and it often breaks up mappings in undesirable ways. `minimap2` offers much better control.

We usually don't work with reads that short and stay with the 10 Kb read length cutoff, but at 70X coverage it should be possible to get a better assembly....

One more thing. Shasta haploid assembly does aggressive bubble removal. If this genome has high heterozygosity, the assembly graph could contain large bubbles of which Shasta only keeps one side....