Xiangyu Pan

ERROR: unable to start device PNG

1

when i used ggThemeAssist, i met the error:  how should i do ?

NGmerge or fastqc shoud be used in quality control before alignment

7

Hi, It's really interesting tool to identify circle DNA from DNAseq data. But, recently, we are considered with the variety of circle DNA length and length of insenrtion of reads,...

how to merge multiple samples counts in RangedSummarizedExperiment object?

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I have filtered my bulk ATAC-seq bam files by removing the duplicates and all reads in chrM. But my bam files don't have a @RG header information. So I didn't...

Hi, it's an impressive tool to help us find an appropriate trajectory inference method in single cell data. But recently, I got tough in using ```infer_trajectory``` . I found it...

Can we used velocyto to analyze bulk RNA seq data

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Hello, Can we used velocyto to analysis bulk RNA seq data. We want used this wonderful methods to do the same analysis juts like the smart-seq2 pipeline you have showed...

How to remove the abnomal copy-number (CN) gains or losses regions

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Hi Tan, it's really a interesting tool to analyse the 3D genome on single-cell level. Recently, we also implemented this platform in our projects. But we met some problems. As...

NO fragments.tsv.gz OF Hematopoiesis cells

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Hi, I have downloaded scATAC_Heme_All_SummarizedExperiment.final.rds followed your links. I checked the ```Group``` information in ```colData```. And I also want to use the segments files from this cells. ``` table(Heme_meta_info$Group) B_Cells...