Pierre-Alexandre Fonta
Pierre-Alexandre Fonta
Hello @jdcourcol and @joni-herttuainen , I have looked at actual data. I would like to validate with you that you would expect the following: 1 - when you give a...
Hello @joni-herttuainen, No worries. I think we could now consider the specifications of this use case done.
As an alternative to `GROBID`, there is the solution [here](https://github.com/BlueBrain/neurocurator/blob/annotation_viewer/neurocurator/annotation_viewer.py), developed in the context of [OpenMinTeD](http://www.openminted.eu/). The extracted text could be accessed through `document_text` [here](https://github.com/BlueBrain/neurocurator/blob/fcb887759d444da5cc7e8d7a6914299e070db893/neurocurator/annotation_viewer.py#L76).
UPDATE Actions The section for evaluation in `params.yaml` could be simplified after #351. There is indeed no more the need for mapping` scispaCy` labels to our labels.
AllenAI people forgot to use `--code` with `spacy package`. https://github.com/allenai/scispacy/blob/4ade4ec897fa48c2ecf3187caa08a949920d126d/project.yml#L593
As our corpora are in a format different from the `scispaCy` one, we don't actually need their custom reader (`specialized_ner_reader`). If we can tell `prodigy` to generate a `config.cfg` with...
Hello @FrancescoCasalegno ! What about closing this issue? The goal of the issue was to see what `config.cfg` Prodigy was generating for fine-tuning an existing model. It is not relevant...
## Additional context See also the part on _DVC elements_ in https://github.com/BlueBrain/Search/pull/351#issuecomment-843037012 about `what` one should do to deal with DVC while working on `data_and_models/`.
Hello @FrancescoCasalegno, **Did we know about `Studio`, a tool from the people who made `DVC` and `CML`?** I have tried Studio (https://dvc.org/doc/studio). This user interface on top of DVC +...
> this also include the EntityRuler component There are 2 pipelines for each `modelX`. One in `data_and_models/models/ner/`. One in `data_and_models/models/ner_er/`. So the `EntityRuler` is loaded only if one uses the...