Christopher Paciorek
Christopher Paciorek
In `dCJS` functions in `nimbleEcology`, we use `is.na()` on inputs that are the result of `ADbreak`. Our checking for non-AD enabled functions is nowhere near sophisticated enough to be able...
rhub has a bunch of (seemingly) new configs that one can run checks under. I ran under `rchk` (option #19), as I presume this mimics the "rchk" checks that CRAN...
We're currently planning to include a wrapper function, `nimbleOccu`, to provide lme4-like interface for setting up occupancy models using macros and (optionally) running MCMC. If we try to use `nimbleHMC`...
WIP: do not merge without discussion. In particular @perrydv see my changes to `custom_optim_inner`. Flagging @weizhangstats @paul-vdb @kenkellner in case anyone has thoughts on item 3 below or other thoughts...
Based on a user question, we've seen that using different initial values but same seed for chains where the model is fully conjugate results in identical samples (after a very...
It runs (which I was thinking it might not because of 1-d vs 2-d allocation for the samples saved for calculating the covariance), but in a simple example, there are...
WIP. For discussion with @danielturek @perrydv before merging. This adds the Barker proposal sampler as discussed extensively in this [NCT issue](https://github.com/perrydv/nimbleCoreTeam/issues/544). We will need to consider whether to simply add...
@kenkellner @perrydv We agreed to change: - `enableModelMacros` -> `enableMacros` - `model_macro_builder` -> `buildModelMacro` Given we are omitting "Model" from `enableModelMacros`, perhaps we should go with `buildMacro`? Also I have...