Christopher Paciorek

Not really an issue per se, so we may want to close this after a bit of discussion, but in working with Claudia, this came up: In setup code, suppose...

bug in compiling length-1 vectors?

1

Claudia ran across this issue. She has a case where in setup code 'p' is sometimes 1 and sometimes 2 and it wasn't compiling for `p=1`. Here's a simplified example....

turn on parallel Eigen

7

We should do this for next release.

explore use of environment as the data structure for nimblePointerList contentsList

1

In looking at slow mcmc build times for a user example (260,000 nodes), taking 80-90 minutes for buildMCMC, I noticed that assignment into the contentsList of samplerFunctions and initFunctionList seemed...

Per Duncan: One question is whether the code in inst/ that gets compiled needs updates to use CXX_STD, etc. For example, is the inst/CppCode/GNUmakefile still used to create libnimble ?...

some sort of name clash if 'calcNodes' used in run code without being defined

1

This seems to only occur if 'calcNodes' is used and not 'calcNodes2' so seems like some sort of naming issue with names used internally in Nimble. I.e. presumably 'calcNodes' is...

documentation for is.na and is.nan in DSL

6

I don't think we document that is.na and is.nan are available in the DSL. Also, is.na does not seem to function as one would expect: ``` a = nimbleFunction( run=function(x=double(0))...

model compilation fails if model vars are named 'true' or 'false'

1

Another in the occasional series of naming issues. In the BUGS biops example a variable is named 'true'. This causes problems in the generated C++. ``` example = 'biops' dir...

dealing with scalars in setValues

5

Let's discuss the following in person. Question is whether to allow values(model, node)

can't recover after forgetting to use 'project' in second call to compileNimble

3

If we forget to use 'project' in the second compile call, then subsequent correct use of 'project' fails. code