kite

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Citation

2

Hi kite authors, Thanks for developing a useful tool. Do you all have a preferred citation for `kite`? I've already cited `kallisto` and the `bustools` papers, but for `kite` I'm...

jacobkimmel

Hello Pacher lab, Thank you so much for sharing your code and helping us to analyze our data; I am analyzing my asap-seq data. For that purpose, first I used...

saramoein372

Using kite for haircut-seq

1

Dear Pachter Lab members, There is a single-cell method named [haircut-seq](https://academic.oup.com/nar/article/doi/10.1093/nar/gkaa240/5819935) which I'm trying to reimplement their pipeline using kallisto | bustools. I found _kite_ the right tool for this...

abearab

Cell barcodes almost completely non-overlapping in vignette

1

I tried running through the vignette for the PBMC 1K dataset. I was able to reproduce a list of 124,716 cell barcodes coming from the kallisto/bus pipeline. However when I...

heathergeiger

Dear Sir or Madam, I am trying to use the kallisto/bustools pipeline (https://www.kallistobus.tools/kite_tutorial.html) on our KITE-seq data. I have a question on the following command: kallisto index -i FeaturesMismatch.idx -k...

shannjiang

Add an option to include single-base deletions in the FeatureMismatch files. This variation will require benchmarking on real data before release.

jasegehring