genomebam header does not contain sort_order value SO nor command_line CL

[SolKatzman]

kallisto version v0.48.0

The header of the bam file created with the --genomebam option contains only these lines:

@HD VN:1.0 @PG ID:kallisto PN:kallisto VN:0.48.0 @SQ SN:chrIV LN:1531933 ...

I believe the bam file is sorted by coordinate.

The HD record should contain the sortorder attribute "SO coordinate" In addition, the PG record should contain the command line attribute "CL command line"

@HD VN:1.0 SO:coordinate @PG ID:kallisto PN:kallisto VN:0.48.0 CL:long string of command line with options

Sol Katzman UCSC Genomics Institute.