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python error querying biosample id

Open diekhans opened this issue 2 months ago • 3 comments

pip install git+https://github.com/pachterlab/ffq 
% ffq --version
ffq 0.3.1
% ffq SAMN20207153
[2025-10-13 22:32:26,336]    INFO Parsing sample SAMN20207153
[2025-10-13 22:32:26,338]   ERROR 'NoneType' object has no attribute 'text'
usage: ffq [-h] [-o OUT] [-l LEVEL] [--ftp] [--aws] [--gcp] [--ncbi] [--split] [--verbose]
           [--version]
           IDs [IDs ...]
ffq: error: For possible failure modes, please see https://github.com/pachterlab/ffq#failure-modes

🍸🍸

diekhans avatar Oct 14 '25 05:10 diekhans

I see the same error when running ffq. How can this error be fixed?

ayoraind avatar Oct 24 '25 15:10 ayoraind

This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 5 days.

github-actions[bot] avatar Nov 24 '25 13:11 github-actions[bot]

This is a great tool; it seems ashamed to have it die due too lack of basic bug fixes like this.

RE: This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 5 days.

diekhans avatar Nov 24 '25 17:11 diekhans