Pablo R. Mier

icon indicating a website link pablormier.github.io

icon company Heidelberg University icon location Germany icon location Scientist @ Institute for Computational Biomedicine (@saezlab), Heidelberg University and EMBL-EBI visitor.

Results 17 issues of Pablo R. Mier

Update documentation to explain the new Hipster Model

documentation
ready

Move common algorithm code to abstract classes

Algorithms like Dijkstra, A\* etc share lots of lines in common. Create abstract classes to extend basic behaviour and reuse same data structures and components.

enhancement

Create hipster-examples to run examples from a command line interface

task

Reuse DFS in IDA*

Both codes are mostly similar. Use the DFS (or extend the DFS algorithm) to be used in IDA*

enhancement

Disable CPLEX clone logs using the CPLEX params

2 comment

solveCobraMILP contains code to remove 'clone1.log' file ([see code]( https://github.com/opencobra/cobratoolbox/blob/2ed83d14eb0e7877856c34ae10f192013b8cdffe/src/base/solvers/solveCobraMILP.m#L316)). Disabling clone logs should be done by passing extra parameters through varargin (concretely, passing an option structure where output.clonelog =...

add category for Bioinformatics and a survey paper

Docs: update graphical LASSO example

2 comment

**Describe the bug** The example in https://www.cvxpy.org/examples/applications/sparse_covariance_est.html cannot be run on CVXPY 1.3.2 with CVXOPT. I've also replaced the ad-hoc method to compute the trace of the matrix with the...