pLink2
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Published
20 hours ago •
pFindStudio
pFindStudio
Meaning of pQuant output
Dear pLink developers, I have used an isotopically labelled cross-linker and want to compare two different conditions using the pQuant option in Plink2 for quantitation. I get a nice output, but I am not sure about the meaning of the columns in the resutling pQuant.spectra.list table. What do Sample1 and 2 correspond to? Is a low Score_interference good/bad or a high one? Is WidthEluting_Sample1/2 specified in seconds? What does Flag_ProteinInfer and Similarity_IsotopicDIS_Sample1/2 mean? Is the Score_Identification a different one than the Plink2 score?
Thank you in advance!
Best,
Iwan
