CaLM
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Protein language model trained on coding DNA
CaLM
The Codon adaptation Language Model
This repository encapsulates all code required to reproduce the results of the paper "Codon language embeddings provide strong signals for use in protein engineering", by Carlos Outeiral and Charlotte M. Deane.
Citation
If you use our work, please cite:
Outeiral, Carlos, and Charlotte M. Deane. Codon language embeddings provide strong signals for use in protein engineering Nature Machine Intelligence 6.2 (2024): 170-179.
Installation
git clone https://github.com/oxpig/CaLM
python setup.py install
Usage
from calm import CaLM
model = CaLM()
model.embed_sequence('ATGGTATAGAGGCATTGA')