PyDESeq2
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[BUG] Synthetic example dataset doesn't work
Describe the bug When installing this package via pip in a venv and using the example dataset, method load_example_data in pydeseq2\utils.py fails because it cannot read the file "test_counts.csv" because there isn't one. I Had to copy it manually from the repo.
There is no dataset folder in C:...\venv\lib\site-packages\datasets\synthetic\test_counts.csv
To Reproduce pip install pydesq2 run this example: https://pydeseq2.readthedocs.io/en/latest/auto_examples/plot_minimal_pydeseq2_pipeline.html
Expected behavior File should be present and the code should open and parse the file.
Desktop (please complete the following information):
- win10x64
- python 3.9