R-outbreak-info

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genomics locations: can't get to a particular location

2

`b117_nyc = getPrevalence(pangolin_lineage = "B.1.1.7", location="New York")` ... if you know you want to look at the county New York, there's no way to access this info without going through...

flaneuse

Problem with authenticateUser()

1

If I run the following: ``` b1.177_spain = getPrevalence(pangolin_lineage = "B.1.177", location="Spain") Retrieving data... **Please authenticate by calling authenticateUser() to access the API.** ``` but any other command works just...

josephhughes

Is it possible to choose only semples derived from wastewater? When loading the sample into GISAID, there is the possibility to select the host. It can be Human, Wastewater and...

carlottaolivero

 I have been trying to plot lineage prevalence for Bangalore using 90 days but it R interface plots only up to July 2022. I checked in GISAID, there...

farahishtiaq

Hello Outbreak.info team, First above all, thanks for your amazing tool. It has been so helpful so far. My question is: Is there a way to retrieve silent and intergenic...

a-roguet

I'm trying to get daily cases and deaths for all states in the US. However, I've found that the output of `getAdmin1ByCountry` is not as complete as the output of...

watronfire

e.g. Omicron should also include all recombinants which are recombinants of BA.1 and BA.2 (any Omicron lineage x Omicron lineage)

flaneuse

I could not use this library

1

The outbreak-info library is not functional.

liumeng595

Request: Add info from the summary table on outbreak.info Mutation Reports

1

I am trying to use this package to generate large tables which we are currently building manually. We need information which we are currently looking up on the Mutation Report...

starlagthornhill

_Submitted by user:_ I also just got this error: > sV433F Could not find location I'm not sure if this means that I am somehow inputting the location incorrectly, or...

EmilyHaag