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Genomics API: getPrevalence() does not accept deletions

Open EmilyHaag opened this issue 3 years ago • 1 comments

Submitted by user: I noticed a pretty significant limitation in the getPrevalence() function: the function does not accept deletions. This is the error message I’ve seen (using a deletion found in omicron, which is also the example from the outbreak.info site which shows how to format deletion mutation names):

In getGenomicData(query_url = "prevalence-by-location", pangolin_lineage = pangolin_lineage, : Mutations should be specified in the format gene:mutation, like "S:E484K". The following mutations are not in the specified format: S:DEL69/70

EmilyHaag avatar Jan 12 '22 17:01 EmilyHaag