.mod.EDTA.TEanno.sum was empty

[Jimpann97]

Hello, Professor Ou.

Recently, I have been using EDTA to annotate transposable elements (TEs) in multiple animal genomes. However, while some genomes can generate the .mod.EDTA.TEanno.sum file, others are blank.

My command is: perl EDTA.pl --step all --genome genome.fa --species others --threads 128 --sensitive 1 --anno 1 --overwrite 1 --curatedlib /DATA6/EDTA/11.software/SINELINE.fa

The log that the .sum was empty shown that :

Use of uninitialized value in pattern match (m//) at /DATA6/jimpan2/EDTA/util/call_seq_by_list.pl line 90. Use of uninitialized value $chr_pre in hash element at /DATA6/jimpan2/EDTA/util/call_seq_by_list.pl line 92. Use of uninitialized value $pos in pattern match (m//) at /DATA6/jimpan2/EDTA/util/call_seq_by_list.pl line 103. Use of uninitialized value $pos in concatenation (.) or string at /DATA6/jimpan2/EDTA/util/call_seq_by_list.pl line 106. ERROR: Can not recognize this MSU position in the list! ERROR: TE annotation stats results not found in genome.fa.mod.EDTA.TE.fa.stat!

Best, Pan