Finding a suitable reference for a set of genomes

[MostafaYA]

Hello, thanks for this great tool. Just a question: I wonder how to select the appropriate reference for a set of (diverse) genomes.
When I run the referenceseeker in this case, it gives different reference for each genome.

[oschwengers]

Hi @MostafaYA, thanks for this excellent question! This is indeed an interesting use case and we already started to work on a solution for that. However, this will still take a while. Maybe we can provide a solution for that at the end of this year .