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Published 20 hours ago • verified publisher icon oschwengers

Improve plasmid annotation

Open oschwengers opened this issue 3 years ago • 0 comments

Superseede UniRef100/UniRef90 annotations by the following specialized plasmid protein DBs:

Mobilization proteins:

  • MobScan: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937521 https://castillo.dicom.unican.es/mobscan_about/ https://castillo.dicom.unican.es/mobscan_about/MOBfamDB.gz

Conjugation proteins:

  • CONJScan https://github.com/gem-pasteur/Macsyfinder_models/tree/master/models/Conjugation http://dx.doi.org/10.1371/journal.pone.0110726 http://dx.doi.org/10.1038/srep23080

oschwengers avatar Nov 27 '20 14:11 oschwengers