suspect
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openmrslab
MRS processing tools
Suspect currently couldn't read a RDA format coming from Siemens XA60 software version. Upon further inspection, some of the headers are changed, particularly the Siemens' VOI info. In the old...
The proposed changes make the new values in the Twix header configurable. This allows the use of this function for pipelines where some (but not all) values should be anonymised....
Workaround are quite nasty. I've just wanted to notify the problem.
- Added module RAMRS_SVD_weighting (Receive Array MRS SVD weighting, from the reference in the comments). Performs SVD channel combination on the raw data (prior to averaging). Useful in cases where...
Many changes made to this module - Added function for automatic identification of a target to use for spectral registration - Fixed a bug in the way the subset of...
Hi Suspect gurus. I'm having trouble processing some Siemens Prisma data. If I use the following to co-register my MRS and T1-MRI data: ``` mrs = suspect.io.load_siemens_dicom("/path/to/mrs/dicom") anat = suspect.image.load_nifti("/path/to/corresponding/t1.nii.gz")...
Hello, The function[ `correct_frequency_and_phase`](https://github.com/openmrslab/suspect/blob/master/suspect/processing/frequency_correction.py#L204) with method `rwa` calls with too many arguments [`residual_water_alignment`](https://github.com/openmrslab/suspect/blob/master/suspect/processing/frequency_correction.py#L7). If the function is called with 2 `MRSData` arguments and `method='rwa'` . It returns `TypeError: residual_water_alignment() takes...
Hello, I'm trying to use the suspect processing tools. At the moment only the water suppression works. When I try to run frequency correction I always get an error with...
Is it possible somehow to make some eddy current correction? If not yet, it can be a nice enhancement. It is also in the experts' consensus recommendations in: > Near,...