wrong when install under CENTOS7

[guyujun]

error when install pdbfixer1.5 on centos7: removing '/usr/lib/python2.7/site-packages/pdbfixer-1.5-py2.7.egg' (and everything under it) creating /usr/lib/python2.7/site-packages/pdbfixer-1.5-py2.7.egg Extracting pdbfixer-1.5-py2.7.egg to /usr/lib/python2.7/site-packages Sorry: TypeError: compile() expected string without null bytes Sorry: TypeError: compile() expected string without null bytes Sorry: TypeError: compile() expected string without null bytes Sorry: TypeError: compile() expected string without null bytes Sorry: TypeError: compile() expected string without null bytes Sorry: TypeError: compile() expected string without null bytes Sorry: TypeError: compile() expected string without null bytes Sorry: TypeError: compile() expected string without null bytes pdbfixer 1.5 is already the active version in easy-install.pth

pdbfixer is already can active by comline. but it can not read PDB.

return another error..: Traceback (most recent call last): File "./repair.py", line 107, in repair(pdbfile) File "./repair.py", line 83, in repair fixer = PDBFixer(filename=pdbfile) File "/usr/lib/python2.7/site-packages/pdbfixer-1.5-py2.7.egg/pdbfixer/pdbfixer.py", line 277, in init templatePdb = app.PDBFile(os.path.join(templatesPath, file)) File "/usr/lib64/python2.7/site-packages/simtk/openmm/app/pdbfile.py", line 160, in init self.positions = self._positions[0] IndexError: list index out of range

please help.

[peastman]

How exactly did you install it? Did you previously have another version installed? It looks like it thinks you have two copies installed by two different means.

[guyujun]

thank you， I install it by conda and it works well~