openmm-cookbook
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Add example showing how to add restraints
This suggestion is from twitter:
this exists, no? https://github.com/openmm/openmm-cookbook/blob/main/notebooks/cookbook/Restraining%20Atom%20Positions.ipynb
Maybe the idea is to apply restraints based on a collective variable? @jchodera do you have any insight on what the poster had in mind?
@peastman : That's my guess: Definition restraints on collective variables.
The Plumed package has much better documentation and sophisticated ways of doing this, though. I wonder if a more complete tutorial on using Plumed with OpenMM might be useful?