jose-reviews icon indicating copy to clipboard operation
jose-reviews copied to clipboard

[PRE REVIEW]: evolved: open software for teaching Evolutionary biology through virtual inquiries

Open editorialbot opened this issue 10 months ago • 13 comments

Submitting author: @mjanuario (Matheus Januario) Repository: https://github.com/mjanuario/evolved Branch with paper.md (empty if default branch): https://github.com/mjanuario/evolvedPaper/tree/main Version: V1.0 Editor: Pending Reviewers: Pending Managing EiC: Lorena Barba

Status

status

Status badge code:

HTML: <a href="https://jose.theoj.org/papers/20e0ba014f4f5844c214f7f5fdef6228"><img src="https://jose.theoj.org/papers/20e0ba014f4f5844c214f7f5fdef6228/status.svg"></a>
Markdown: [![status](https://jose.theoj.org/papers/20e0ba014f4f5844c214f7f5fdef6228/status.svg)](https://jose.theoj.org/papers/20e0ba014f4f5844c214f7f5fdef6228)

Author instructions

Thanks for submitting your paper to JOSE @mjanuario. Currently, there isn't a JOSE editor assigned to your paper.

@mjanuario if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

Editor instructions

The JOSE submission bot @editorialbot is here to help you find and assign reviewers and start the main review. To find out what @editorialbot can do for you type:

@editorialbot commands

editorialbot avatar Jan 30 '25 09:01 editorialbot

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf

editorialbot avatar Jan 30 '25 09:01 editorialbot

@editorialbot generate pdf

mjanuario avatar Feb 01 '25 19:02 mjanuario

@editorialbot generate pdf

mjanuario avatar Feb 01 '25 20:02 mjanuario

Suggested reviewrs: K8hertweck (Kate Hertweck), pschloss (Pat Schloss), fmichonneau (François Michonneau), mnarayan (Manjari Narayan), erahulkulkarni (Rahul Kulkarni),

mjanuario avatar Feb 01 '25 20:02 mjanuario

@editorialbot generate pdf

mjanuario avatar Feb 01 '25 20:02 mjanuario

@editorialbot commands

mjanuario avatar Feb 01 '25 20:02 mjanuario

Hello @mjanuario, here are the things you can ask me to do:


# List all available commands
@editorialbot commands

# Get a list of all editors's GitHub handles
@editorialbot list editors

# Adds a checklist for the reviewer using this command
@editorialbot generate my checklist

# Set a value for branch
@editorialbot set jose-paper as branch

# Run checks and provide information on the repository and the paper file
@editorialbot check repository

# Check the references of the paper for missing DOIs
@editorialbot check references

# Generates the pdf paper
@editorialbot generate pdf

# Generates a LaTeX preprint file
@editorialbot generate preprint

# Get a link to the complete list of reviewers
@editorialbot list reviewers

editorialbot avatar Feb 01 '25 20:02 editorialbot

@editorialbot generate my checklist

mjanuario avatar Feb 01 '25 20:02 mjanuario

Checklists can only be created once the review has started in the review issue

editorialbot avatar Feb 01 '25 20:02 editorialbot

@editorialbot generate pdf

labarba avatar Jun 24 '25 20:06 labarba

The error says branch name is incorrect. I have manually edited the top comment to remove the branch (as it should be left empty for the default branch). Not sure if this will work...

labarba avatar Jun 24 '25 20:06 labarba

@editorialbot generate pdf

labarba avatar Jun 24 '25 20:06 labarba

:warning: An error happened when generating the pdf. Paper file not found.

editorialbot avatar Jun 24 '25 20:06 editorialbot

@mjanuario – we can't find your paper.md file in the repository. See: https://openjournals.readthedocs.io/en/jose/submitting.html#what-should-my-paper-contain

labarba avatar Jun 24 '25 21:06 labarba

Hi @labarba ! Thank you for checking. The paper.md file is located in the article branch of the repository:

https://github.com/mjanuario/evolved/tree/article

Please let me know if there's anything else I can clarify!

Best regards, Matheus

mjanuario avatar Jul 03 '25 19:07 mjanuario

Hello Dr Barba,

I have modified the branch for my article submitted for JOSE https://github.com/openjournals/jose-reviews/issues/274#issuecomment-3001809759. Thank you very much for flagging my mistake!

Cheers, Matheus

On Tue, Jun 24, 2025 at 5:07 PM Lorena A. Barba @.***> wrote:

labarba left a comment (openjournals/jose-reviews#274) https://github.com/openjournals/jose-reviews/issues/274#issuecomment-3001863293

@mjanuario https://github.com/mjanuario – we can't find your paper.md file in the repository. See: https://openjournals.readthedocs.io/en/jose/submitting.html#what-should-my-paper-contain

— Reply to this email directly, view it on GitHub https://github.com/openjournals/jose-reviews/issues/274#issuecomment-3001863293, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADMTKLGPHDBMMKK2RHHPOJT3FG4ZNAVCNFSM6AAAAABWE2VFQWVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZTAMBRHA3DGMRZGM . You are receiving this because you were mentioned.Message ID: @.***>

mjanuario avatar Jul 03 '25 19:07 mjanuario

@editorialbot generate pdf

labarba avatar Jul 04 '25 15:07 labarba

@editorialbot set article as branch

labarba avatar Jul 04 '25 15:07 labarba

Done! branch is now article

editorialbot avatar Jul 04 '25 15:07 editorialbot

@editorialbot generate pdf

labarba avatar Jul 04 '25 15:07 labarba

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

editorialbot avatar Jul 04 '25 16:07 editorialbot

@editorialbot invite @ethanwhite as editor

labarba avatar Jul 04 '25 16:07 labarba

Invitation to edit this submission sent!

editorialbot avatar Jul 04 '25 16:07 editorialbot

@editorialbot assign me as editor

ethanwhite avatar Jul 07 '25 11:07 ethanwhite