[PRE REVIEW]: evolved: open software for teaching Evolutionary biology through virtual inquiries
Submitting author: @mjanuario (Matheus Januario) Repository: https://github.com/mjanuario/evolved Branch with paper.md (empty if default branch): https://github.com/mjanuario/evolvedPaper/tree/main Version: V1.0 Editor: Pending Reviewers: Pending Managing EiC: Lorena Barba
Status
Status badge code:
HTML: <a href="https://jose.theoj.org/papers/20e0ba014f4f5844c214f7f5fdef6228"><img src="https://jose.theoj.org/papers/20e0ba014f4f5844c214f7f5fdef6228/status.svg"></a>
Markdown: [](https://jose.theoj.org/papers/20e0ba014f4f5844c214f7f5fdef6228)
Author instructions
Thanks for submitting your paper to JOSE @mjanuario. Currently, there isn't a JOSE editor assigned to your paper.
@mjanuario if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.
Editor instructions
The JOSE submission bot @editorialbot is here to help you find and assign reviewers and start the main review. To find out what @editorialbot can do for you type:
@editorialbot commands
Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.
For a list of things I can do to help you, just type:
@editorialbot commands
For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:
@editorialbot generate pdf
:warning: An error happened when generating the pdf.
@editorialbot generate pdf
:warning: An error happened when generating the pdf.
@editorialbot generate pdf
:warning: An error happened when generating the pdf.
Suggested reviewrs: K8hertweck (Kate Hertweck), pschloss (Pat Schloss), fmichonneau (François Michonneau), mnarayan (Manjari Narayan), erahulkulkarni (Rahul Kulkarni),
@editorialbot generate pdf
:warning: An error happened when generating the pdf.
@editorialbot commands
Hello @mjanuario, here are the things you can ask me to do:
# List all available commands
@editorialbot commands
# Get a list of all editors's GitHub handles
@editorialbot list editors
# Adds a checklist for the reviewer using this command
@editorialbot generate my checklist
# Set a value for branch
@editorialbot set jose-paper as branch
# Run checks and provide information on the repository and the paper file
@editorialbot check repository
# Check the references of the paper for missing DOIs
@editorialbot check references
# Generates the pdf paper
@editorialbot generate pdf
# Generates a LaTeX preprint file
@editorialbot generate preprint
# Get a link to the complete list of reviewers
@editorialbot list reviewers
@editorialbot generate my checklist
Checklists can only be created once the review has started in the review issue
@editorialbot generate pdf
:warning: An error happened when generating the pdf.
The error says branch name is incorrect. I have manually edited the top comment to remove the branch (as it should be left empty for the default branch). Not sure if this will work...
@editorialbot generate pdf
:warning: An error happened when generating the pdf. Paper file not found.
@mjanuario – we can't find your paper.md file in the repository. See: https://openjournals.readthedocs.io/en/jose/submitting.html#what-should-my-paper-contain
Hi @labarba ! Thank you for checking. The paper.md file is located in the article branch of the repository:
https://github.com/mjanuario/evolved/tree/article
Please let me know if there's anything else I can clarify!
Best regards, Matheus
Hello Dr Barba,
I have modified the branch for my article submitted for JOSE https://github.com/openjournals/jose-reviews/issues/274#issuecomment-3001809759. Thank you very much for flagging my mistake!
Cheers, Matheus
On Tue, Jun 24, 2025 at 5:07 PM Lorena A. Barba @.***> wrote:
labarba left a comment (openjournals/jose-reviews#274) https://github.com/openjournals/jose-reviews/issues/274#issuecomment-3001863293
@mjanuario https://github.com/mjanuario – we can't find your paper.md file in the repository. See: https://openjournals.readthedocs.io/en/jose/submitting.html#what-should-my-paper-contain
— Reply to this email directly, view it on GitHub https://github.com/openjournals/jose-reviews/issues/274#issuecomment-3001863293, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADMTKLGPHDBMMKK2RHHPOJT3FG4ZNAVCNFSM6AAAAABWE2VFQWVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZTAMBRHA3DGMRZGM . You are receiving this because you were mentioned.Message ID: @.***>
@editorialbot generate pdf
:warning: An error happened when generating the pdf.
@editorialbot set article as branch
Done! branch is now article
@editorialbot generate pdf
:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:
@editorialbot invite @ethanwhite as editor
Invitation to edit this submission sent!
@editorialbot assign me as editor