arpack-ng
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opencollab
libparpack built without using FFLAGS when using autotools
Expected behavior
FFLAGS will be used for all parts of the build.
Actual behavior
FFLAGS are used for everything except libparpack.
Where/how to reproduce the problem
- arpack-ng: release or commit (SHA) 3.9.1 40329031ae8deb7c1e26baf8353fa384fc37c251
- OS: debian ? ubuntu ? mac ?... Arch Linux
- compiler: gcc ? intel ? clang ? version ?...
$ gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-linux-gnu/13.2.1/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /build/gcc/src/gcc/configure --enable-languages=ada,c,c++,d,fortran,go,lto,objc,obj-c++ --enable-bootstrap --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --with-build-config=bootstrap-lto --with-linker-hash-style=gnu --with-system-zlib --enable-__cxa_atexit --enable-cet=auto --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-default-ssp --enable-gnu-indirect-function --enable-gnu-unique-object --enable-libstdcxx-backtrace --enable-link-serialization=1 --enable-linker-build-id --enable-lto --enable-multilib --enable-plugin --enable-shared --enable-threads=posix --disable-libssp --disable-libstdcxx-pch --disable-werror
Thread model: posix
Supported LTO compression algorithms: zlib zstd
gcc version 13.2.1 20230801 (GCC)
$ f90 -v
Using built-in specs.
COLLECT_GCC=f95
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-linux-gnu/13.2.1/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /build/gcc/src/gcc/configure --enable-languages=ada,c,c++,d,fortran,go,lto,objc,obj-c++ --enable-bootstrap --prefix=/usr --libdir=/usr/lib --libexecdir=/usr/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.archlinux.org/ --with-build-config=bootstrap-lto --with-linker-hash-style=gnu --with-system-zlib --enable-__cxa_atexit --enable-cet=auto --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-default-ssp --enable-gnu-indirect-function --enable-gnu-unique-object --enable-libstdcxx-backtrace --enable-link-serialization=1 --enable-linker-build-id --enable-lto --enable-multilib --enable-plugin --enable-shared --enable-threads=posix --disable-libssp --disable-libstdcxx-pch --disable-werror
Thread model: posix
Supported LTO compression algorithms: zlib zstd
gcc version 13.2.1 20230801 (GCC)
$ ompi_info
Package: Open MPI builduser@buildhost Distribution
Open MPI: 4.1.6
Open MPI repo revision: v4.1.6
Open MPI release date: Sep 30, 2023
Open RTE: 4.1.6
Open RTE repo revision: v4.1.6
Open RTE release date: Sep 30, 2023
OPAL: 4.1.6
OPAL repo revision: v4.1.6
OPAL release date: Sep 30, 2023
MPI API: 3.1.0
Ident string: 4.1.6
Prefix: /usr
Configured architecture: x86_64-pc-linux-gnu
Configure host: buildhost
Configured by: builduser
Configured on: Fri Jan 19 20:02:42 UTC 2024
Configure host: buildhost
Configure command line: '--prefix=/usr' '--enable-builtin-atomics' '--enable-memchecker' '--enable-mpi-cxx' '--enable-mpi-fortran=all' '--enable-pretty-print-stacktrace' '--libdir=/usr/lib' '--sysconfdir=/etc/openmpi' '--with-cuda=/opt/cuda' '--with-hwloc=external' '--with-libevent=external' '--with-pmix=external' '--with-valgrind'
Built by: builduser
Built on: Fri Jan 19 20:02:42 UTC 2024
Built host: buildhost
C bindings: yes
C++ bindings: yes
Fort mpif.h: yes (all)
Fort use mpi: yes (full: ignore TKR)
Fort use mpi size: deprecated-ompi-info-value
Fort use mpi_f08: yes
Fort mpi_f08 compliance: The mpi_f08 module is available, but due to limitations in the gfortran compiler and/or Open MPI, does not support the following: array subsections, direct passthru (where possible) to underlying Open MPI's C functionality
Fort mpi_f08 subarrays: no
Java bindings: no
Wrapper compiler rpath: runpath
C compiler: gcc
C compiler absolute: /usr/bin/gcc
C compiler family name: GNU
C compiler version: 13.2.1
C++ compiler: g++
C++ compiler absolute: /usr/bin/g++
Fort compiler: gfortran
Fort compiler abs: /usr/bin/gfortran
Fort ignore TKR: yes (!GCC$ ATTRIBUTES NO_ARG_CHECK ::)
Fort 08 assumed shape: yes
Fort optional args: yes
Fort INTERFACE: yes
Fort ISO_FORTRAN_ENV: yes
Fort STORAGE_SIZE: yes
Fort BIND(C) (all): yes
Fort ISO_C_BINDING: yes
Fort SUBROUTINE BIND(C): yes
Fort TYPE,BIND(C): yes
Fort T,BIND(C,name="a"): yes
Fort PRIVATE: yes
Fort PROTECTED: yes
Fort ABSTRACT: yes
Fort ASYNCHRONOUS: yes
Fort PROCEDURE: yes
Fort USE...ONLY: yes
Fort C_FUNLOC: yes
Fort f08 using wrappers: yes
Fort MPI_SIZEOF: yes
C profiling: yes
C++ profiling: yes
Fort mpif.h profiling: yes
Fort use mpi profiling: yes
Fort use mpi_f08 prof: yes
C++ exceptions: no
Thread support: posix (MPI_THREAD_MULTIPLE: yes, OPAL support: yes, OMPI progress: no, ORTE progress: yes, Event lib: yes)
Sparse Groups: no
Internal debug support: no
MPI interface warnings: yes
MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
dl support: yes
Heterogeneous support: no
mpirun default --prefix: no
MPI_WTIME support: native
Symbol vis. support: yes
Host topology support: yes
IPv6 support: no
MPI1 compatibility: no
MPI extensions: affinity, cuda, pcollreq
FT Checkpoint support: no (checkpoint thread: no)
C/R Enabled Debugging: no
MPI_MAX_PROCESSOR_NAME: 256
MPI_MAX_ERROR_STRING: 256
MPI_MAX_OBJECT_NAME: 64
MPI_MAX_INFO_KEY: 36
MPI_MAX_INFO_VAL: 256
MPI_MAX_PORT_NAME: 1024
MPI_MAX_DATAREP_STRING: 128
MCA allocator: basic (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA allocator: bucket (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA backtrace: execinfo (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA btl: tcp (MCA v2.1.0, API v3.1.0, Component v4.1.6)
MCA btl: smcuda (MCA v2.1.0, API v3.1.0, Component v4.1.6)
MCA btl: self (MCA v2.1.0, API v3.1.0, Component v4.1.6)
MCA btl: vader (MCA v2.1.0, API v3.1.0, Component v4.1.6)
MCA compress: gzip (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA compress: bzip (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA crs: none (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA dl: dlopen (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA event: external (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA hwloc: external (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA if: linux_ipv6 (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA if: posix_ipv4 (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA installdirs: env (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA installdirs: config (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA memchecker: valgrind (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA memory: patcher (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA mpool: hugepage (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA patcher: overwrite (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA pmix: flux (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA pmix: ext3x (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA pmix: isolated (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA pstat: linux (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA rcache: gpusm (MCA v2.1.0, API v3.3.0, Component v4.1.6)
MCA rcache: grdma (MCA v2.1.0, API v3.3.0, Component v4.1.6)
MCA rcache: rgpusm (MCA v2.1.0, API v3.3.0, Component v4.1.6)
MCA reachable: netlink (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA reachable: weighted (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA shmem: posix (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA shmem: mmap (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA shmem: sysv (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA timer: linux (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA errmgr: default_tool (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA errmgr: default_app (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA errmgr: default_orted (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA errmgr: default_hnp (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA ess: singleton (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA ess: env (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA ess: slurm (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA ess: hnp (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA ess: tool (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA ess: pmi (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA filem: raw (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA grpcomm: direct (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA iof: tool (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA iof: orted (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA iof: hnp (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA odls: default (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA odls: pspawn (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA oob: tcp (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA plm: isolated (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA plm: slurm (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA plm: rsh (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA ras: slurm (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA ras: simulator (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA regx: naive (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA regx: fwd (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA regx: reverse (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA rmaps: mindist (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA rmaps: ppr (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA rmaps: rank_file (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA rmaps: round_robin (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA rmaps: seq (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA rmaps: resilient (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA rml: oob (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA routed: direct (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA routed: radix (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA routed: binomial (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA rtc: hwloc (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA schizo: ompi (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA schizo: jsm (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA schizo: slurm (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA schizo: flux (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA schizo: orte (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA state: hnp (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA state: app (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA state: tool (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA state: orted (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA state: novm (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA bml: r2 (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA coll: han (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA coll: basic (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA coll: adapt (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA coll: cuda (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA coll: self (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA coll: inter (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA coll: monitoring (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA coll: sm (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA coll: libnbc (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA coll: tuned (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA coll: sync (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA fbtl: posix (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA fcoll: dynamic_gen2 (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA fcoll: individual (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA fcoll: two_phase (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA fcoll: vulcan (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA fcoll: dynamic (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA fs: ufs (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA io: romio321 (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA io: ompio (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA op: avx (MCA v2.1.0, API v1.0.0, Component v4.1.6)
MCA osc: rdma (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA osc: pt2pt (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA osc: sm (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA osc: monitoring (MCA v2.1.0, API v3.0.0, Component v4.1.6)
MCA pml: v (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA pml: ob1 (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA pml: cm (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA pml: monitoring (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA rte: orte (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA sharedfp: sm (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA sharedfp: lockedfile (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA sharedfp: individual (MCA v2.1.0, API v2.0.0, Component v4.1.6)
MCA topo: treematch (MCA v2.1.0, API v2.2.0, Component v4.1.6)
MCA topo: basic (MCA v2.1.0, API v2.2.0, Component v4.1.6)
MCA vprotocol: pessimist (MCA v2.1.0, API v2.0.0, Component v4.1.6)
$ ld -v
GNU ld (GNU Binutils) 2.41.0
- environment: export FFLAGS ?...
$ printenv
SHELL=/bin/bash
DEBUG_FFLAGS= -ffile-prefix-map=/build/arpack/src=/usr/src/debug/arpack
BUILDTOOL=devtools
SUDO_GID=0
PYTHONHASHSEED=0
TEXTDOMAINDIR=/usr/share/locale
SUDO_COMMAND=/bin/bash -c bash -c cd\ /startdir;\ makepkg\ "$@" -bash --syncdeps --noconfirm --log --holdver --skipinteg --install
SUDO_USER=root
FFLAGS=-march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -fstack-clash-protection -fcf-protection -ffile-prefix-map=/build/arpack/src=/usr/src/debug/arpack
PWD=/build/arpack/src
SOURCE_DATE_EPOCH=1706383633
LOGNAME=builduser
CXXFLAGS=-march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -fstack-clash-protection -fcf-protection -Wformat -Werror=format-security -Wp,-D_GLIBCXX_ASSERTIONS -g -ffile-prefix-map=/build/arpack/src=/usr/src/debug/arpack -flto=auto
DEBUG_RUSTFLAGS=-C debuginfo=2 --remap-path-prefix=/build/arpack/src=/usr/src/debug/arpack
COMMAND_MODE=legacy
LDFLAGS=-Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=auto
HOME=/build
LANG=C.UTF-8
RUSTFLAGS= -C debuginfo=2 --remap-path-prefix=/build/arpack/src=/usr/src/debug/arpack
FCFLAGS=-march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -fstack-clash-protection -fcf-protection -ffile-prefix-map=/build/arpack/src=/usr/src/debug/arpack
MAKEFLAGS=-j32
TERM=xterm-256color
USER=builduser
SHLVL=1
DEBUGINFOD_URLS=https://debuginfod.archlinux.org
CHOST=x86_64-pc-linux-gnu
PATH=/usr/local/sbin:/usr/local/bin:/usr/bin:/usr/bin/site_perl:/usr/bin/vendor_perl:/usr/bin/core_perl
CFLAGS=-march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -fstack-clash-protection -fcf-protection -Wformat -Werror=format-security -g -ffile-prefix-map=/build/arpack/src=/usr/src/debug/arpack -flto=auto
SUDO_UID=0
MAIL=/var/mail/builduser
BUILDTOOLVER=1:1.0.4-1.1-any
OLDPWD=/startdir
TEXTDOMAIN=pacman-scripts
_=/usr/bin/printenv
- configure: ./configure --enable-stuff ? cmake -DSTUFFS=ON ?
./configure --enable-icb --enable-mpi --prefix=/usr
cmake -DCMAKE_INSTALL_PREFIX='/usr' -DICB=True -DMPI=True
Steps to reproduce the problem
For autotools with the issue:
$ cd arpack-ng
$ ./bootstrap
$ ./configure --enable-icb --enable-mpi --prefix=/usr
$ make
# make install
For cmake without the issue:
$ cd arpack-ng
$ ./bootstrap
$ cmake -DCMAKE_INSTALL_PREFIX='/usr' -DICB=True -DMPI=True
$ cmake --build
# cmake --install
Notes, remarks
I believe the issue is caused by: https://github.com/opencollab/arpack-ng/blob/40329031ae8deb7c1e26baf8353fa384fc37c251/PARPACK/SRC/MPI/Makefile.am#L4-L5 Removing those lines and both build systems use FFLAGS throughout.
I believe the issue is caused by:
If tested to work at your side, feel free to push this patch