quaich
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Runtime error at the Usage steps: "ValueError: View table is out of the bounds of chromosomes in cooler."
Hello.
I followed the Usage section in the README.
Specifically, I cloned this repository and rewrote the following four lines in config/config.yml
to point at my local hg38 files.
https://github.com/open2c/quaich/blob/a50deb32968925d206c933e40a121506bcb63918/config/config.yml#L2-L5
Then, I proceeded to Step 4.
Dry-run snakemake --use-conda --configfile config/config.yml -n
has been done successfully.
However, snakemake --use-conda --configfile config/config.yml --cores 10
raises the following error from cooltools/lib/checks.py
:
ValueError: View table is out of the bounds of chromosomes in cooler.
The version of cooltools
after the Usage Step 3 is 0.5.1.
I would appreciate if I could resolve this error. Do I have to change more lines in the config files?