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Runtime error at the Usage steps: "ValueError: View table is out of the bounds of chromosomes in cooler."

Open hisakatha opened this issue 2 years ago • 1 comments

Hello. I followed the Usage section in the README. Specifically, I cloned this repository and rewrote the following four lines in config/config.yml to point at my local hg38 files.

https://github.com/open2c/quaich/blob/a50deb32968925d206c933e40a121506bcb63918/config/config.yml#L2-L5

Then, I proceeded to Step 4. Dry-run snakemake --use-conda --configfile config/config.yml -n has been done successfully. However, snakemake --use-conda --configfile config/config.yml --cores 10 raises the following error from cooltools/lib/checks.py: ValueError: View table is out of the bounds of chromosomes in cooler.

The version of cooltools after the Usage Step 3 is 0.5.1.

I would appreciate if I could resolve this error. Do I have to change more lines in the config files?

hisakatha avatar Sep 16 '22 10:09 hisakatha